News

182 new datasets were released this June

June 29, 2016

Includes ChIP-seq, ATAC-seq, RNA-seq data, and more

180 new datasets were released in April 2016

May 3, 2016

Includes experiments from human, mouse, and fly!

First Hi-C data for the ENCODE Project

May 13, 2016

12 Hi-C experiments have been released from the Dekker lab

Roadmap Epigenomics metadata integrated

October 6, 2015

The Roadmap Epigenomics Mapping Consortium (Roadmap) metadata has been fully incorporated into this site including the standardization of terms and ontologies.

Batch Download

March 9, 2015

Links to download data files for a search result of assays can now be downloaded via the Batch Download feature.

Data release: 13 human and 3 mouse datasets

September 29, 2014

All 16 datasets come from RNA-seq

Data release: 23 human and 5 mouse datasets

September 12, 2014

These datasets are from ChIP-seq, iCLIP, RAMPAGE, RNA-seq, and WGBS assays

First version of the ENCODE genomics annotations

October 16, 2014

The set of annotations includes an expression matrix, transcription start sites, etc.

modENCODE and ENCODE comparison papers published

August 28, 2014

Publications comparing expression, regulatory features, and chromatin structure between fly, worm, and human

Data Release from ENCODE: 760 experiments of ChIP-seq, RNA-seq, ChIA-Pet and 3 new assay types in human and mouse

July 14, 2014

The ENCODE Data Coordination Center is pleased to announce the first public release of data from the third phase of ENCODE.

Updated data release policy

March 24, 2014

Community may freely download, analyze and publish results based on any ENCODE data without restrictions as soon as they are released.

February and March 2017 Data Release Overview

April 4, 2017

135 new datasets from February; 94 datasets from March

May and June 2017 Data Release Overview

June 9, 2017

338 new experiments: 310 human datasets, and 28 mouse datasets

Data release: 306 human and 188 mouse datasets

April 1, 2016

We are pleased to announce that the following datasets have been released on the ENCODE Portal since the beginning of 2016

Data release: 367 modERN datasets

July 6, 2016

367 modERN ChIP-seq datasets have just been released in the ENCODE portal, both from fly and worm

50 more modERN experiments

May 24, 2016

Totaling to 198 modERN experiments released in May

Second annual ENCODE Users Meeting

March 22, 2016

The second annual ENCODE Users Meeting will be held at Stanford University!

Data release: 3 human and 91 mouse datasets

June 23, 2015

Includes RNA Bind-n-Seq, ChIP-seq, RNA-seq, and WGBS assays

Changelogs

May 28, 2015

To improve transparency about the changes to the objects that comprise the ENCODE metadata schema, we are publishing changelogs for each object

Data release: 114 human and 98 mouse datasets

December 17, 2014

Includes ChIP-seq, RNA-seq, WGBS, and more

Create custom track hubs from a search result

November 19, 2014

Data from a search results of assays can now be visualized at the UCSC Genome Browser.

Visualize tracks on the UCSC Genome Browser via track-hubs-on-the-fly

June 16, 2014

The ability to visualize tracks at the UCSC Genome Browser via track hubs has been released

ENCODE/Roadmap Epigenomics Tutorial

November 12, 2013

Materials from ENCODE/Roadmap Epigenomics Tutorial at ASHG2013 available online

October 2016 release: 380 new ENCODE experiments

November 2, 2016

380 ENCODE experiments were released this October, 495 total including from GGR and modERN.

November 2016 Data Release Overview

December 1, 2016

405 new datasets released this November, ranging from ChIP-seq, Hi-C, DNase-seq, RNA-seq, to siRNA knockdowns