182 new datasets were released this June
June 29, 2016
Includes ChIP-seq, ATAC-seq, RNA-seq data, and more
180 new datasets were released in April 2016
May 3, 2016
Includes experiments from human, mouse, and fly!
First Hi-C data for the ENCODE Project
May 13, 2016
12 Hi-C experiments have been released from the Dekker lab
Roadmap Epigenomics metadata integrated
October 6, 2015
The Roadmap Epigenomics Mapping Consortium (Roadmap) metadata has been fully incorporated into this site including the standardization of terms and ontologies.
March 9, 2015
Links to download data files for a search result of assays can now be downloaded via the Batch Download feature.
Data release: 13 human and 3 mouse datasets
September 29, 2014
All 16 datasets come from RNA-seq
Data release: 23 human and 5 mouse datasets
September 12, 2014
These datasets are from ChIP-seq, iCLIP, RAMPAGE, RNA-seq, and WGBS assays
First version of the ENCODE genomics annotations
October 16, 2014
The set of annotations includes an expression matrix, transcription start sites, etc.
modENCODE and ENCODE comparison papers published
August 28, 2014
Publications comparing expression, regulatory features, and chromatin structure between fly, worm, and human
Data Release from ENCODE: 760 experiments of ChIP-seq, RNA-seq, ChIA-Pet and 3 new assay types in human and mouse
July 14, 2014
The ENCODE Data Coordination Center is pleased to announce the first public release of data from the third phase of ENCODE.
Updated data release policy
March 24, 2014
Community may freely download, analyze and publish results based on any ENCODE data without restrictions as soon as they are released.
February and March 2017 Data Release Overview
April 4, 2017
135 new datasets from February; 94 datasets from March
May and June 2017 Data Release Overview
June 9, 2017
338 new experiments: 310 human datasets, and 28 mouse datasets
Data release: 306 human and 188 mouse datasets
April 1, 2016
We are pleased to announce that the following datasets have been released on the ENCODE Portal since the beginning of 2016
Data release: 367 modERN datasets
July 6, 2016
367 modERN ChIP-seq datasets have just been released in the ENCODE portal, both from fly and worm
50 more modERN experiments
May 24, 2016
Totaling to 198 modERN experiments released in May
Second annual ENCODE Users Meeting
March 22, 2016
The second annual ENCODE Users Meeting will be held at Stanford University!
Data release: 3 human and 91 mouse datasets
June 23, 2015
Includes RNA Bind-n-Seq, ChIP-seq, RNA-seq, and WGBS assays
May 28, 2015
To improve transparency about the changes to the objects that comprise the ENCODE metadata schema, we are publishing changelogs for each object
Data release: 114 human and 98 mouse datasets
December 17, 2014
Includes ChIP-seq, RNA-seq, WGBS, and more
Create custom track hubs from a search result
November 19, 2014
Data from a search results of assays can now be visualized at the UCSC Genome Browser.
Visualize tracks on the UCSC Genome Browser via track-hubs-on-the-fly
June 16, 2014
The ability to visualize tracks at the UCSC Genome Browser via track hubs has been released
ENCODE/Roadmap Epigenomics Tutorial
November 12, 2013
Materials from ENCODE/Roadmap Epigenomics Tutorial at ASHG2013 available online
October 2016 release: 380 new ENCODE experiments
November 2, 2016
380 ENCODE experiments were released this October, 495 total including from GGR and modERN.
November 2016 Data Release Overview
December 1, 2016
405 new datasets released this November, ranging from ChIP-seq, Hi-C, DNase-seq, RNA-seq, to siRNA knockdowns