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Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
4
Assay category
DNA binding
4
Target of assay
control
4
transcription factor
Date released
July, 2011
3
October, 2011
1
Available data
bam
4
bigWig
4
fastq
4
Experiment status
released
4
archived
1
Organism
Homo sapiens
4
Biosample type
cell line
4
Organ
blood
2
bodily fluid
2
brain
2
Cell
cancer cell
2
fibroblast
1
lymphoblast
1
Project
ENCODE
4
Genome assembly
GRCh38
4
hg19
3
Lab
Richard Myers, HAIB
3
Sherman Weissman, Yale
1
Audit category:
extremely low read depth
130
missing antibody
72
inconsistent ontology term
49
extremely low spot score
48
control extremely low read depth
14
missing control alignments
13
extremely low coverage
7
extremely low read length
4
file validation error
2
inconsistent control
2
inconsistent read count
2
missing analysis_step_run
1
missing nih_institutional_certification
1
missing raw data in replicate
1
Audit category:
insufficient read depth
1
insufficient read length
1
Audit category:
low read depth
2
inconsistent platforms
1
low read length
1
mixed read lengths
1
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
4 results
Clear Filters
ChIP-seq
cell line
GM12878
1
NB4
1
PFSK-1
1
SK-N-MC
1
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