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Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
Repli-seq
104
Repli-chip
63
Assay category
DNA binding
5202
Transcription
2928
DNA accessibility
1100
RNA binding
625
DNA methylation
569
Replication timing
167
Genotyping
142
3D chromatin structure
84
Proteomics
14
DNA sequencing
4
Date released
February, 2012
90
July, 2015
36
July, 2012
21
July, 2017
12
April, 2012
6
September, 2017
2
Available data
bigWig
153
bam
104
fastq
104
tar
63
tsv
36
Experiment status
released
167
archived
15
Organism
Homo sapiens
149
Mus musculus
18
Biosample type
cell line
113
in vitro differentiated cells
35
primary cell
19
Organ
blood
37
bodily fluid
37
embryo
23
epithelium
19
skin of body
14
lung
11
liver
9
brain
8
connective tissue
8
mammary gland
8
lymph node
7
uterus
7
blood vessel
6
penis
6
vasculature
6
vein
6
kidney
4
musculature of body
2
prostate gland
2
spleen
1
Cell
cancer cell
39
epithelial cell
33
stem cell
25
B cell
19
lymphoblast
17
fibroblast
14
endothelial cell
6
hematopoietic cell
6
keratinocyte
6
neuroblastoma cell
6
myeloid cell
4
myoblast
3
induced pluripotent stem cell
2
smooth muscle cell
2
T cell
1
leukocyte
1
neural cell
1
Project
ENCODE
167
Genome assembly
hg19
149
mm9
18
Lab
John Stamatoyannopoulos, UW
90
David Gilbert, FSU
77
Audit category:
inconsistent ontology term
1
Audit category:
unreplicated experiment
31
Audit category:
inconsistent platforms
9
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
167 results
Clear Filters
Repli-seq
Repli-chip
cell line
BG02
6
1
GM06990
6
1
HeLa-S3
6
1
IMR-90
6
1
BJ
6
+ See 32 more…
in vitro differentiated cells
hepatocyte
3
neural progenitor cell
3
splanchnic mesodermal cell
3
endodermal cell
2
epiblast cell
2
+ See 17 more…
primary cell
endothelial cell of umbilical vein
6
keratinocyte
6
myoblast
3
stem cell of epidermis
2
T-cell
1
+ See 1 more…
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