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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • Repli-seq
    104
  • Repli-chip
    63
Assay category
  • DNA binding
    5202
  • Transcription
    2928
  • DNA accessibility
    1100
  • RNA binding
    625
  • DNA methylation
    569
  • Replication timing
    167
  • Genotyping
    142
  • 3D chromatin structure
    84
  • Proteomics
    14
  • DNA sequencing
    4
Date released
  • February, 2012
    90
  • July, 2015
    36
  • July, 2012
    21
  • July, 2017
    12
  • April, 2012
    6
  • September, 2017
    2
Available data
  • bigWig
    153
  • bam
    104
  • fastq
    104
  • tar
    63
  • tsv
    36
Experiment status
  • released
    167
  • archived
    15
Organism
  • Homo sapiens
    149
  • Mus musculus
    18
Biosample type
  • cell line
    113
  • in vitro differentiated cells
    35
  • primary cell
    19
Organ
  • blood
    37
  • bodily fluid
    37
  • embryo
    23
  • epithelium
    19
  • skin of body
    14
  • lung
    11
  • liver
    9
  • brain
    8
  • connective tissue
    8
  • mammary gland
    8
  • lymph node
    7
  • uterus
    7
  • blood vessel
    6
  • penis
    6
  • vasculature
    6
  • vein
    6
  • kidney
    4
  • musculature of body
    2
  • prostate gland
    2
  • spleen
    1
Cell
  • cancer cell
    39
  • epithelial cell
    33
  • stem cell
    25
  • B cell
    19
  • lymphoblast
    17
  • fibroblast
    14
  • endothelial cell
    6
  • hematopoietic cell
    6
  • keratinocyte
    6
  • neuroblastoma cell
    6
  • myeloid cell
    4
  • myoblast
    3
  • induced pluripotent stem cell
    2
  • smooth muscle cell
    2
  • T cell
    1
  • leukocyte
    1
  • neural cell
    1
Project
  • ENCODE
    167
Genome assembly
  • hg19
    149
  • mm9
    18
Lab
  • John Stamatoyannopoulos, UW
    90
  • David Gilbert, FSU
    77
Audit category:
  • inconsistent ontology term
    1
Audit category:
  • unreplicated experiment
    31
Audit category:
  • inconsistent platforms
    9
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

167 results

Clear Filters
Repli-seq
Repli-chip
cell line
BG0261
GM0699061
HeLa-S361
IMR-9061
BJ6
in vitro differentiated cells
hepatocyte3
neural progenitor cell3
splanchnic mesodermal cell3
endodermal cell2
epiblast cell2
primary cell
endothelial cell of umbilical vein6
keratinocyte6
myoblast3
stem cell of epidermis2
T-cell1
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