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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • CAGE
    22
  • polyA RNA-seq
    12
  • ChIP-seq
    1
Assay category
  • Transcription
    34
  • DNA binding
    1
Target of assay
  • control
    1
Date released
  • July, 2013
    1921
  • March, 2014
    605
  • July, 2016
    468
  • May, 2016
    392
  • June, 2014
    358
  • November, 2017
    294
  • January, 2017
    277
  • November, 2016
    214
  • March, 2016
    181
  • August, 2016
    158
  • June, 2017
    155
  • October, 2016
    146
  • October, 2017
    146
  • December, 2014
    144
  • February, 2016
    132
  • February, 2018
    131
  • December, 2018
    128
  • November, 2015
    127
  • February, 2011
    123
  • September, 2016
    101
  • June, 2015
    100
  • March, 2012
    92
  • November, 2018
    92
  • September, 2017
    92
  • September, 2018
    80
  • March, 2018
    79
  • March, 2017
    78
  • October, 2011
    75
  • July, 2012
    71
  • December, 2017
    67
  • February, 2017
    66
  • June, 2016
    62
  • December, 2016
    61
  • June, 2018
    58
  • February, 2019
    56
  • February, 2012
    53
  • January, 2016
    52
  • April, 2011
    51
  • August, 2015
    51
  • September, 2012
    51
  • August, 2012
    50
  • August, 2017
    48
  • December, 2010
    42
  • January, 2018
    42
  • March, 2011
    42
  • October, 2015
    40
  • November, 2011
    39
  • August, 2011
    37
  • July, 2011
    36
  • September, 2011
    36
  • June, 2011
    35
  • May, 2012
    35
  • July, 2015
    32
  • May, 2017
    32
  • April, 2012
    31
  • June, 2012
    29
  • April, 2016
    26
  • December, 2011
    26
  • July, 2014
    26
  • January, 2012
    24
  • April, 2018
    21
  • April, 2015
    17
  • September, 2015
    17
  • October, 2018
    16
  • April, 2017
    15
  • November, 2014
    12
  • September, 2014
    12
  • December, 2015
    11
  • May, 2011
    11
  • May, 2015
    11
  • January, 2019
    9
  • January, 2015
    8
  • July, 2017
    7
  • May, 2018
    7
  • July, 2009
    6
  • July, 2018
    5
  • April, 2013
    4
  • November, 2012
    4
  • February, 2015
    3
  • May, 2013
    1
Available data
  • bam
    35
  • bigWig
    35
  • fastq
    35
  • tsv
    33
  • bed bedRnaElements
    22
  • bigBed bedRnaElements
    22
  • bed tss_peak
    21
  • bigBed tss_peak
    21
  • gff gff3
    21
  • bed idr_peak
    18
  • bigBed idr_peak
    18
Experiment status
  • released
    35
Organism
  • Homo sapiens
    22
  • Mus musculus
    13
Biosample type
  • primary cell
    22
  • tissue
    10
  • in vitro differentiated cells
    3
Organ
  • connective tissue
    12
  • epithelium
    5
  • extraembryonic component
    5
  • blood vessel
    4
  • placenta
    4
  • skin of body
    4
  • vasculature
    4
  • blood
    3
  • bodily fluid
    3
  • musculature of body
    3
  • adipose tissue
    2
  • arterial blood vessel
    2
  • bone element
    2
  • bone marrow
    2
  • brain
    2
  • limb
    2
  • vein
    2
  • gonad
    1
  • heart
    1
  • intestine
    1
  • liver
    1
  • mammary gland
    1
  • small intestine
    1
  • testis
    1
  • thymus
    1
Cell
  • epithelial cell
    5
  • hematopoietic cell
    5
  • fibroblast
    4
  • stem cell
    4
  • endothelial cell
    3
  • leukocyte
    3
  • melanocyte
    2
  • myeloid cell
    2
  • B cell
    1
  • monocyte
    1
  • pericyte
    1
Project
  • ENCODE
    35
Genome assembly
  • GRCh38
    21
  • hg19
    21
  • mm10
    13
  • mm9
    1
Lab
  • Piero Carninci, RIKEN
    22
  • Bing Ren, UCSD
    11
  • Barbara Wold, Caltech
    2
Audit category:
  • insufficient read length
    11
  • missing spikeins
    11
  • insufficient read depth
    10
Audit category:
  • inconsistent control read length
    22
  • low replicate concordance
    9
  • low read depth
    3
  • inconsistent platforms
    2
  • low read length
    1
  • missing spikeins
    1
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

35 results

Clear Filters
CAGE
polyA RNA-seq
ChIP-seq
primary cell
melanocyte of skin2
B cell1
CD14-positive monocyte1
articular chondrocyte of knee joint1
bone marrow macrophage1
tissue
brain1
brown adipose tissue1
heart1
limb1
liver1
in vitro differentiated cells
myocyte11
hematopoietic multipotent progenitor cell1
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