Experiment matrix
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Assay
- total RNA-seq343
- RNA microarray167
- RNA Bind-n-Seq158
- small RNA-seq147
- DNAme array135
- genotyping array116
- siRNA RNA-seq113
- Repli-seq104
- CAGE103
- RRBS86
- CRISPRi RNA-seq77
- ATAC-seq64
- RAMPAGE64
- Repli-chip63
- ChIA-PET57
- microRNA-seq54
- CRISPR RNA-seq50
- Hi-C47
- genetic modification DNase-seq46
- RIP-seq45
- WGBS39
- PAS-seq35
- RIP-chip32
- polyA depleted RNA-seq32
- FAIRE-seq30
- RNA-PET30
- single cell RNA-seq26
- MS-MS14
- microRNA counts14
- 5C13
- DNA-PET6
- genotyping HTS5
- MRE-seq4
- MeDIP-seq4
- iCLIP3
- whole genome sequencing assay3
- 5' RLM RACE2
- MNase-seq2
- Switchgear2
- Circulome-seq1
Assay category
Target of assay
Date released
- October, 2016382
- May, 2016371
- January, 2017281
- February, 2012249
- February, 2011247
- August, 2012239
- July, 2014229
- July, 2011222
- November, 2016207
- September, 2016195
- February, 2018167
- June, 2016161
- August, 2015157
- April, 2016154
- August, 2016152
- March, 2011146
- September, 2012146
- March, 2016139
- January, 2018133
- April, 2011128
- May, 2012127
- December, 2014125
- September, 2011117
- December, 2016112
- July, 2012111
- August, 2018110
- March, 2012109
- June, 2017108
- November, 2015107
- September, 2017107
- June, 2014101
- March, 2018101
- July, 201598
- December, 201796
- October, 201795
- November, 201893
- December, 201187
- November, 201487
- October, 201483
- September, 201882
- November, 201176
- August, 201173
- February, 201772
- June, 201269
- December, 201067
- January, 201664
- April, 201261
- February, 201659
- January, 201259
- June, 201858
- June, 201155
- March, 201753
- April, 201847
- December, 201840
- December, 201538
- April, 201737
- May, 201736
- July, 201732
- May, 201132
- October, 201830
- April, 201528
- August, 201727
- July, 201820
- July, 200918
- September, 201418
- October, 201516
- June, 201515
- May, 201813
- January, 201912
- May, 201512
- May, 20148
- February, 20147
- November, 20107
- April, 20136
- January, 20116
- November, 20125
- October, 20094
- February, 20153
- April, 20142
- January, 20152
- March, 20152
- February, 20131
- March, 20131
- May, 20131
- September, 2015
Available data
- bed broadPeak1686
- tsv1589
- bigBed broadPeak1448
- tagAlign781
- tar579
- bed bed3+467
- bed bedRnaElements258
- bigBed bedRnaElements258
- gtf256
- sra232
- idat175
- bed tss_peak131
- bigBed tss_peak131
- gff gff3131
- bed bedMethyl125
- bigBed bedMethyl125
- bed idr_peak109
- bigBed idr_peak109
- bed bedLogR61
- bigBed bedLogR60
- sam59
- wig59
- bed bed1242
- bigBed bed1242
- bed bedGraph30
- bed bedExonScore27
- bigBed bedExonScore27
- csfasta24
- hdf520
- bed bed917
- bigBed bed917
- hic16
- bed bed6+14
- bigBed bed6+14
- rcc14
- bigBed bed3+13
- csqual12
- bed peptideMapping8
- bigBed peptideMapping8
- bed bed37
- bigBed bed37
- bed modPepMap6
- bed pepMap6
- bigBed modPepMap6
- bigBed pepMap6
- bedpe5
- CEL4
- vcf4
- fasta3
Experiment status
Organism
Biosample type
Organ
- epithelium498
- skin of body418
- mammary gland372
- kidney353
- connective tissue348
- brain233
- musculature of body199
- uterus198
- penis181
- lymph node166
- vasculature144
- blood vessel121
- bone element96
- spleen88
- intestine78
- large intestine78
- prostate gland77
- vein68
- extraembryonic component65
- limb52
- heart43
- pancreas37
- arterial blood vessel30
- bone marrow30
- eye24
- gonad24
- bronchus20
- placenta19
- testis18
- mouth12
- esophagus8
- spinal cord8
- lymphatic vessel6
- lymphoid tissue5
- adipose tissue3
- breast3
- ovary3
- nose2
- pericardium2
- trachea2
- urinary bladder2
Cell
Lab
- Michael Snyder, Stanford1936
- Kevin White, UChicago1144
- Bradley Bernstein, Broad1056
- Richard Myers, HAIB979
- John Stamatoyannopoulos, UW837
- Brenton Graveley, UConn751
- Gene Yeo, UCSD458
- Thomas Gingeras, CSHL397
- Valerie Reinke, Yale361
- Tim Reddy, Duke298
- Bing Ren, UCSD280
- Joseph Costello, UCSF240
- Susan Celniker, LBNL160
- Chris Burge, MIT158
- Gregory Crawford, Duke131
- Ross Hardison, PennState126
- Peggy Farnham, USC118
- Barbara Wold, Caltech109
- Xiang-Dong Fu, UCSD94
- Alexander Hoffmann, UCLA92
- David Gilbert, FSU77
- Piero Carninci, RIKEN77
- Manuel Garber, UMass68
- Vishwanath Iyer, UTA66
- Sherman Weissman, Yale57
- Yijun Ruan, JAX47
- Scott Tenenbaum, SUNY-Albany42
- Kevin Struhl, HMS41
- Christina Leslie, MSKCC32
- Eric Lécuyer, IRCM30
- Jason Lieb, UNC30
- Ali Mortazavi, UCI28
- Job Dekker, UMass26
- Joe Ecker, Salk26
- Erez Lieberman-Aiden, Baylor17
- Morgan Giddings, UNC14
- Paul Khavari, Stanford13
- Will Greenleaf, Stanford13
- John Rinn, Broad7
- Andrew Z. Fire, Stanford4
- Alexander Urban, Stanford3
Audit category:
Audit category:
Audit category:
- missing genetic modification characterization2280
- low read length2273
- mild to moderate bottlenecking2091
- low read depth1839
- moderate library complexity933
- inconsistent platforms746
- inconsistent control read length602
- borderline replicate concordance456
- control low read depth399
- missing analysis_step_run367
- antibody characterized with exemption356
- mixed read lengths320
- missing external identifiers244
- inconsistent target of control experiment215
- inconsistent control run_type145
- low spot score135
- missing genotype110
- mixed run types96
- low replicate concordance61
- missing spikeins28
- inconsistent assembly16
- high lambda C methylation ratio3
- low coverage1
month_released!
biosample_type!
BIOSAMPLE