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Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
2
RNA-PET
1
Assay category
DNA binding
2
Transcription
1
Target of assay
RNA binding protein
1
chromatin remodeller
1
control
1
transcription factor
1
Date released
February, 2011
1
November, 2017
1
October, 2011
1
Available data
bam
3
bigWig
3
fastq
3
bed bed12
1
bed narrowPeak
1
bigBed bed12
1
bigBed narrowPeak
1
tagAlign
1
Experiment status
released
3
Organism
Homo sapiens
3
Biosample type
cell line
2
tissue
1
Organ
blood
1
bodily fluid
1
bone element
1
prostate gland
1
Cell
cancer cell
2
Project
ENCODE
3
Genome assembly
hg19
3
GRCh38
2
Lab
Bradley Bernstein, Broad
2
Yijun Ruan, JAX
1
Audit category:
extremely low read depth
204
missing antibody
72
inconsistent ontology term
49
extremely low spot score
48
missing control alignments
43
control extremely low read depth
20
extremely low coverage
7
extremely low read length
7
inconsistent read count
3
inconsistent control
2
file validation error
1
missing analysis_step_run
1
missing raw data in replicate
1
Audit category:
low read length
2
mixed run types
2
antibody characterized with exemption
1
inconsistent control read length
1
inconsistent control run_type
1
inconsistent platforms
1
low read depth
1
mild to moderate bottlenecking
1
mixed read lengths
1
moderate library complexity
1
month_released!
September, 2015
BIOSAMPLE
ASSAY
3 results
Clear Filters
ChIP-seq
RNA-PET
cell line
K562
1
OCI-LY1
1
tissue
prostate gland
1
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