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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    2
  • RNA-PET
    1
Assay category
  • DNA binding
    2
  • Transcription
    1
Target of assay
  • RNA binding protein
    1
  • chromatin remodeller
    1
  • control
    1
  • transcription factor
    1
Date released
  • February, 2011
    1
  • November, 2017
    1
  • October, 2011
    1
Available data
  • bam
    3
  • bigWig
    3
  • fastq
    3
  • bed bed12
    1
  • bed narrowPeak
    1
  • bigBed bed12
    1
  • bigBed narrowPeak
    1
  • tagAlign
    1
Experiment status
  • released
    3
Organism
  • Homo sapiens
    3
Biosample type
  • cell line
    2
  • tissue
    1
Organ
  • blood
    1
  • bodily fluid
    1
  • bone element
    1
  • prostate gland
    1
Cell
  • cancer cell
    2
Project
  • ENCODE
    3
Genome assembly
  • hg19
    3
  • GRCh38
    2
Lab
  • Bradley Bernstein, Broad
    2
  • Yijun Ruan, JAX
    1
Audit category:
  • extremely low read depth
    204
  • missing antibody
    72
  • inconsistent ontology term
    49
  • extremely low spot score
    48
  • missing control alignments
    43
  • control extremely low read depth
    20
  • extremely low coverage
    7
  • extremely low read length
    7
  • inconsistent read count
    3
  • inconsistent control
    2
  • file validation error
    1
  • missing analysis_step_run
    1
  • missing raw data in replicate
    1
Audit category:
  • low read length
    2
  • mixed run types
    2
  • antibody characterized with exemption
    1
  • inconsistent control read length
    1
  • inconsistent control run_type
    1
  • inconsistent platforms
    1
  • low read depth
    1
  • mild to moderate bottlenecking
    1
  • mixed read lengths
    1
  • moderate library complexity
    1
month_released!
  • September, 2015
BIOSAMPLE
ASSAY

3 results

Clear Filters
ChIP-seq
RNA-PET
cell line
K5621
OCI-LY11
tissue
prostate gland1
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