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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    1
  • Hi-C
    1
Assay category
  • 3D chromatin structure
    1
  • DNA binding
    1
Target of assay
  • histone
    1
  • narrow histone mark
    1
Date released
  • January, 2017
    1
  • October, 2018
    1
Available data
  • fastq
    2
  • hic
    1
Experiment status
  • released
    2
Organism
  • Homo sapiens
    2
Biosample type
  • cell line
    1
  • in vitro differentiated cells
    1
Organ
  • blood
    1
  • bodily fluid
    1
Cell
  • hematopoietic cell
    1
  • leukocyte
    1
  • lymphoblast
    1
Project
  • ENCODE
    1
  • GGR
    1
Genome assembly
  • hg19
    2
Lab
  • Erez Lieberman-Aiden, Baylor
    1
  • Manuel Garber, UMass
    1
Audit category:
  • extremely low read depth
    204
  • missing antibody
    72
  • missing control alignments
    59
  • inconsistent ontology term
    49
  • extremely low spot score
    48
  • control extremely low read depth
    20
  • extremely low coverage
    7
  • extremely low read length
    7
  • inconsistent read count
    3
  • file validation error
    2
  • inconsistent control
    2
  • missing analysis_step_run
    1
  • missing nih_institutional_certification
    1
  • missing raw data in replicate
    1
Audit category:
  • missing controlled_by
    1
  • unreplicated experiment
    1
month_released!
  • September, 2015
BIOSAMPLE
ASSAY

2 results

Clear Filters
ChIP-seq
Hi-C
cell line
GM128781
in vitro differentiated cells
dendritic cell1
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