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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    8699
  • DNase-seq
    818
  • polyA RNA-seq
    770
  • shRNA RNA-seq
    523
  • total RNA-seq
    486
  • eCLIP
    459
  • DNAme array
    257
  • small RNA-seq
    214
  • WGBS
    201
  • microRNA-seq
    184
  • ATAC-seq
    180
  • RNA microarray
    170
  • RAMPAGE
    168
  • RNA Bind-n-Seq
    158
  • genotyping array
    123
  • CAGE
    120
  • microRNA counts
    115
  • siRNA RNA-seq
    113
  • Repli-seq
    104
  • RRBS
    103
  • CRISPRi RNA-seq
    77
  • Repli-chip
    63
  • ChIA-PET
    57
  • Hi-C
    55
  • CRISPR RNA-seq
    50
  • PAS-seq
    47
  • genetic modification DNase-seq
    46
  • RIP-seq
    45
  • FAIRE-seq
    37
  • RIP-chip
    32
  • polyA depleted RNA-seq
    32
  • RNA-PET
    31
  • single cell RNA-seq
    30
  • MS-MS
    14
  • 5C
    13
  • genotyping HTS
    13
  • DNA-PET
    6
  • MRE-seq
    4
  • MeDIP-seq
    4
  • iCLIP
    3
  • whole genome sequencing assay
    3
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
Assay category
  • RNA binding
    32
Target of assay
  • RNA binding protein
    18
  • control
    14
Date released
  • April, 2011
    24
  • February, 2011
    8
Available data
  • bed broadPeak
    32
  • bigBed broadPeak
    32
Experiment status
  • released
    32
Organism
  • Homo sapiens
    32
Biosample type
  • cell line
    32
Organ
  • blood
    21
  • bodily fluid
    21
  • liver
    4
  • uterus
    4
  • embryo
    3
Cell
  • cancer cell
    18
  • lymphoblast
    11
  • epithelial cell
    4
  • stem cell
    3
Project
  • ENCODE
    32
Genome assembly
  • hg19
    32
Lab
  • Scott Tenenbaum, SUNY-Albany
    32
month_released!
  • September, 2015
BIOSAMPLE
ASSAY

32 results

Clear Filters
RIP-chip
cell line
GM1287811
K56210
HeLa-S34
HepG24
H1-hESC3
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