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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    8699
  • DNase-seq
    818
  • polyA RNA-seq
    770
  • shRNA RNA-seq
    523
  • total RNA-seq
    486
  • eCLIP
    459
  • DNAme array
    257
  • small RNA-seq
    214
  • WGBS
    201
  • microRNA-seq
    184
  • ATAC-seq
    180
  • RNA microarray
    170
  • RAMPAGE
    168
  • RNA Bind-n-Seq
    158
  • genotyping array
    123
  • CAGE
    120
  • microRNA counts
    115
  • siRNA RNA-seq
    113
  • Repli-seq
    104
  • RRBS
    103
  • CRISPRi RNA-seq
    77
  • Repli-chip
    63
  • ChIA-PET
    57
  • Hi-C
    55
  • CRISPR RNA-seq
    50
  • PAS-seq
    47
  • genetic modification DNase-seq
    46
  • RIP-seq
    45
  • FAIRE-seq
    37
  • RIP-chip
    32
  • polyA depleted RNA-seq
    32
  • RNA-PET
    31
  • single cell RNA-seq
    30
  • MS-MS
    14
  • 5C
    13
  • genotyping HTS
    13
  • DNA-PET
    6
  • MRE-seq
    4
  • MeDIP-seq
    4
  • iCLIP
    3
  • whole genome sequencing assay
    3
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
Assay category
  • 3D chromatin structure
    57
Target of assay
  • transcription factor
    42
  • histone
    15
  • narrow histone mark
    11
  • broad histone mark
    4
  • RNA binding protein
    2
Date released
  • April, 2018
    23
  • May, 2012
    8
  • July, 2014
    7
  • October, 2016
    6
  • June, 2016
    5
  • September, 2016
    5
  • April, 2016
    2
  • December, 2016
    1
Available data
  • fastq
    57
  • bam
    8
  • bed bed12
    8
  • bigBed bed12
    8
  • bigWig
    8
  • bed bed3
    7
  • bigBed bed3
    7
  • tsv
    7
Experiment status
  • released
    57
  • archived
    5
Organism
  • Homo sapiens
    57
Biosample type
  • cell line
    52
  • in vitro differentiated cells
    3
  • primary cell
    2
Organ
  • blood
    30
  • bodily fluid
    30
  • mammary gland
    4
  • epithelium
    2
  • liver
    2
  • arterial blood vessel
    1
  • blood vessel
    1
  • connective tissue
    1
  • embryo
    1
  • intestine
    1
  • large intestine
    1
  • lymph node
    1
  • prostate gland
    1
  • uterus
    1
  • vasculature
    1
Cell
  • cancer cell
    24
  • B cell
    20
  • epithelial cell
    9
  • lymphoblast
    2
  • endothelial cell
    1
  • fibroblast
    1
  • neural cell
    1
  • stem cell
    1
Project
  • ENCODE
    57
Genome assembly
  • hg19
    8
Lab
  • Michael Snyder, Stanford
    49
  • Yijun Ruan, JAX
    8
Audit category:
  • unreplicated experiment
    3
Audit category:
  • antibody characterized with exemption
    41
  • missing analysis_step_run
    7
month_released!
  • September, 2015
BIOSAMPLE
ASSAY

57 results

Clear Filters
ChIA-PET
cell line
K5629
GM192395
GM192405
GM192384
MCF-74
in vitro differentiated cells
hepatocyte1
neural cell1
neural progenitor cell1
primary cell
fibroblast1
pulmonary artery endothelial cell1
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