Experiment matrix
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Assay
Assay category
Target of assay
Date released
- March, 2014373
- October, 2011364
- November, 2017348
- January, 2017283
- June, 2014277
- July, 2011252
- June, 2017242
- February, 2011240
- August, 2012224
- July, 2014222
- February, 2012206
- November, 2015205
- September, 2016175
- September, 2012173
- June, 2016172
- February, 2018171
- December, 2016166
- October, 2017163
- August, 2016160
- March, 2012158
- January, 2018153
- April, 2016149
- March, 2016148
- February, 2017132
- September, 2011129
- December, 2018128
- March, 2011127
- December, 2014118
- September, 2017115
- March, 2018114
- August, 2018110
- December, 2017105
- July, 201597
- May, 201288
- June, 201581
- September, 201880
- March, 201776
- November, 201176
- August, 201174
- August, 201572
- December, 201068
- May, 201766
- February, 201665
- December, 201163
- April, 201159
- August, 201758
- January, 201658
- June, 201858
- February, 201956
- April, 201254
- April, 201752
- July, 201241
- June, 201138
- December, 201535
- July, 201735
- April, 201834
- May, 201132
- June, 201230
- January, 201228
- July, 201820
- September, 2015
- May, 201815
- January, 201914
- October, 201814
- September, 201414
- October, 201513
- April, 201512
- May, 20148
- February, 20147
- November, 20127
- April, 20136
- January, 20116
- May, 20154
- February, 20153
- April, 20142
- March, 20152
- May, 20132
- February, 20131
- November, 20141
- November, 20181
- October, 20141
Available data
- bed broadPeak2305
- bigBed broadPeak1851
- tagAlign1272
- bed bed3+886
- sra387
- bed bedMethyl277
- bigBed bedMethyl277
- idat275
- tsv144
- tar104
- bed bedLogR64
- bigBed bedLogR63
- bed bedGraph30
- hdf520
- hic16
- bigBed bed3+13
- bed bed1212
- bigBed bed1212
- vcf12
- bed peptideMapping8
- bigBed peptideMapping8
- csfasta8
- csqual8
- bed bed37
- bigBed bed37
- bed modPepMap6
- bed pepMap6
- bigBed modPepMap6
- bigBed pepMap6
- bedpe5
- fasta3
- bed bed91
- bigBed bed91
Experiment status
Biosample type
Organ
- brain634
- kidney489
- epithelium462
- intestine457
- musculature of body420
- skin of body342
- connective tissue330
- mammary gland322
- large intestine299
- limb273
- heart264
- stomach208
- uterus186
- vasculature169
- lymph node159
- blood vessel155
- spleen153
- extraembryonic component135
- penis127
- pancreas123
- arterial blood vessel97
- esophagus97
- bone element95
- prostate gland92
- gonad84
- adipose tissue83
- adrenal gland81
- small intestine81
- testis50
- thyroid gland47
- vein46
- placenta45
- nerve41
- breast39
- lymphoid tissue35
- thymus35
- ovary33
- bone marrow28
- eye28
- spinal cord21
- vagina21
- ureter18
- bronchus14
- mouth12
- urinary bladder8
- skeleton5
- lymphatic vessel2
- pericardium2
- tongue2
- nose1
Cell
Lab
- Michael Snyder, Stanford2102
- Bradley Bernstein, Broad1788
- Richard Myers, HAIB1338
- Bing Ren, UCSD1295
- John Stamatoyannopoulos, UW1204
- Kevin White, UChicago1144
- Gene Yeo, UCSD462
- Valerie Reinke, Yale361
- Joseph Costello, UCSF295
- Tim Reddy, Duke280
- Chris Burge, MIT158
- Joe Ecker, Salk130
- Peggy Farnham, USC118
- Xiang-Dong Fu, UCSD94
- Ross Hardison, PennState89
- Gregory Crawford, Duke81
- David Gilbert, FSU77
- Vishwanath Iyer, UTA74
- Sherman Weissman, Yale53
- Barbara Wold, Caltech46
- Manuel Garber, UMass43
- Scott Tenenbaum, SUNY-Albany42
- Kevin Struhl, HMS41
- Jason Lieb, UNC37
- Brenton Graveley, UConn30
- Job Dekker, UMass26
- Erez Lieberman-Aiden, Baylor17
- Morgan Giddings, UNC14
- Yijun Ruan, JAX14
- Will Greenleaf, Stanford13
- Christina Leslie, MSKCC12
- Thomas Gingeras, CSHL10
- John Rinn, Broad7
- Andrew Z. Fire, Stanford4
- Alexander Urban, Stanford3
Audit category:
Audit category:
Audit category:
- low read length3230
- mild to moderate bottlenecking2930
- low read depth2449
- missing genetic modification characterization2278
- moderate library complexity1338
- inconsistent platforms931
- inconsistent control read length795
- control low read depth654
- antibody characterized with exemption637
- mixed read lengths467
- borderline replicate concordance465
- missing analysis_step_run324
- low spot score313
- inconsistent target of control experiment217
- missing external identifiers214
- inconsistent control run_type147
- mixed run types98
- missing genotype90
- inconsistent assembly17
- low coverage4
- high lambda C methylation ratio3
assay_slims!
month_released!
BIOSAMPLE