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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    1289
  • RIP-seq
    29
Assay category
  • DNA binding
    1289
  • RNA binding
    29
Target of assay
  • transcription factor
    3816
  • histone
    3034
  • control
    2599
  • broad histone mark
    1690
  • RNA binding protein
    1450
  • recombinant protein
    1318
  • narrow histone mark
    1237
  • chromatin remodeller
    207
  • other post-translational modification
    72
  • other context
    57
  • nucleotide modification
    4
  • tag
    1
Date released
  • March, 2014
    187
  • July, 2016
    184
  • November, 2017
    163
  • October, 2016
    119
  • May, 2016
    89
  • February, 2018
    72
  • November, 2016
    67
  • January, 2017
    44
  • June, 2016
    44
  • September, 2016
    44
  • December, 2016
    39
  • September, 2018
    39
  • March, 2018
    32
  • June, 2018
    29
  • April, 2017
    27
  • September, 2017
    20
  • December, 2018
    19
  • July, 2018
    17
  • January, 2018
    12
  • December, 2017
    11
  • March, 2016
    11
  • August, 2016
    9
  • January, 2016
    9
  • February, 2017
    8
  • March, 2017
    7
  • June, 2011
    6
  • February, 2016
    4
  • May, 2017
    3
  • October, 2011
    2
  • April, 2018
    1
  • October, 2018
Available data
  • fastq
    1318
  • bam
    1316
  • bigWig
    1287
  • bed narrowPeak
    1285
  • bigBed narrowPeak
    1285
  • bed bedGraph
    29
Experiment status
  • released
    1318
  • archived
    35
  • revoked
    25
Organism
  • Caenorhabditis elegans
    466
  • Drosophila melanogaster
    459
  • Homo sapiens
    392
Biosample type
  • whole organisms
    897
  • cell line
    421
Organ
  • kidney
    208
  • liver
    97
  • blood
    77
  • bodily fluid
    77
  • embryo
    29
  • mammary gland
    9
  • uterus
    1
Cell
  • epithelial cell
    314
  • cancer cell
    184
Project
  • modERN
    644
  • ENCODE
    392
  • modENCODE
    282
Genome assembly
  • ce11
    464
  • dm6
    431
  • ce10
    409
  • hg19
    392
  • GRCh38
    390
  • dm3
    357
Lab
  • Kevin White, UChicago
    528
  • Michael Snyder, Stanford
    477
  • Valerie Reinke, Yale
    180
  • Richard Myers, HAIB
    102
  • Brenton Graveley, UConn
    29
  • Peggy Farnham, USC
    2
Audit category:
  • insufficient read depth
    26
  • poor library complexity
    15
  • severe bottlenecking
    12
  • insufficient replicate concordance
    3
  • partially characterized antibody
    3
  • unreplicated experiment
    3
  • insufficient read length
    2
Audit category:
  • missing genetic modification characterization
    1219
  • mild to moderate bottlenecking
    436
  • moderate library complexity
    179
  • borderline replicate concordance
    101
  • missing external identifiers
    100
  • low read depth
    92
  • missing genotype
    45
  • inconsistent platforms
    30
  • antibody characterized with exemption
    27
  • control low read depth
    27
  • low read length
    6
  • inconsistent control read length
    5
  • mixed read lengths
    2
  • inconsistent assembly
    1
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

1318 results

Clear Filters
ChIP-seq
RIP-seq
whole organisms
whole organism897
cell line
HEK293208
HepG297
K56277
S2R+29
MCF-79
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