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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    217
Assay category
  • DNA binding
    217
Target of assay
  • transcription factor
    211
  • RNA binding protein
    19
  • chromatin remodeller
    8
  • histone
    6
  • other context
    6
  • other post-translational modification
    6
  • broad histone mark
    4
  • narrow histone mark
    2
Date released
  • October, 2011
    54
  • August, 2012
    45
  • May, 2012
    44
  • September, 2011
    33
  • December, 2014
    12
  • June, 2012
    10
  • July, 2011
    8
  • February, 2011
    5
  • February, 2012
    4
  • April, 2017
    2
Available data
  • bam
    217
  • bed narrowPeak
    217
  • bigBed narrowPeak
    217
  • bigWig
    217
  • fastq
    217
  • bed broadPeak
    10
  • bigBed broadPeak
    10
Experiment status
  • released
    217
Organism
  • Homo sapiens
    133
  • Mus musculus
    84
Biosample type
  • cell line
    215
  • tissue
    2
Organ
  • blood
    64
  • bodily fluid
    64
  • spleen
    46
  • lymph node
    38
  • liver
    22
  • lung
    18
  • embryo
    16
  • uterus
    6
  • brain
    5
  • mammary gland
    2
Cell
  • cancer cell
    112
  • B cell
    38
  • lymphoblast
    29
  • epithelial cell
    22
  • stem cell
    16
  • fibroblast
    7
  • neuroblastoma cell
    5
Project
  • ENCODE
    217
Genome assembly
  • GRCh38
    133
  • hg19
    133
  • mm10
    84
  • mm9
    80
Lab
  • Michael Snyder, Stanford
    203
  • Richard Myers, HAIB
    11
  • Kevin Struhl, HMS
    2
  • Sherman Weissman, Yale
    1
Audit category:
  • extremely low read depth
    1
Audit category:
  • missing controlled_by
    114
  • insufficient read depth
    17
  • insufficient replicate concordance
    8
  • insufficient read length
    3
  • missing input control
    2
  • poor library complexity
    2
  • severe bottlenecking
    2
Audit category:
  • low read length
    3230
  • mild to moderate bottlenecking
    2930
  • low read depth
    2538
  • missing genetic modification characterization
    2280
  • moderate library complexity
    1338
  • inconsistent platforms
    1060
  • inconsistent control read length
    866
  • control low read depth
    654
  • antibody characterized with exemption
    637
  • mixed read lengths
    467
  • borderline replicate concordance
    464
  • missing analysis_step_run
    388
  • low spot score
    322
  • missing external identifiers
    246
  • inconsistent target of control experiment
    217
  • inconsistent control run_type
    147
  • missing genotype
    112
  • mixed run types
    98
  • low replicate concordance
    89
  • missing spikeins
    28
  • inconsistent assembly
    17
  • low coverage
    4
  • high lambda C methylation ratio
    3
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

217 results

Clear Filters
ChIP-seq
cell line
MEL cell line46
CH12.LX38
K56235
GM1287829
HepG220
tissue
liver2
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