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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • eCLIP
    459
  • RNA Bind-n-Seq
    158
  • RIP-seq
    45
  • RIP-chip
    32
  • iCLIP
    3
  • Switchgear
    2
Assay category
  • DNA binding
    8698
  • Transcription
    3116
  • DNA accessibility
    1099
  • RNA binding
    699
  • DNA methylation
    569
  • Replication timing
    167
  • Genotyping
    141
  • 3D chromatin structure
    114
  • Proteomics
    14
  • DNA sequencing
    4
Target of assay
  • RNA binding protein
    363
  • control
    334
  • transcription factor
    74
  • recombinant protein
    29
  • chromatin remodeller
    3
  • tag
    1
Date released
  • August, 2018
    110
  • April, 2016
    107
  • November, 2015
    93
  • July, 2015
    61
  • August, 2016
    51
  • March, 2014
    30
  • September, 2016
    26
  • April, 2011
    24
  • December, 2014
    20
  • June, 2014
    20
  • October, 2016
    20
  • December, 2015
    19
  • March, 2016
    17
  • November, 2017
    15
  • April, 2015
    12
  • August, 2017
    12
  • August, 2011
    10
  • February, 2011
    8
  • December, 2017
    7
  • May, 2016
    7
  • August, 2015
    5
  • December, 2016
    5
  • April, 2018
    4
  • February, 2016
    4
  • May, 2015
    4
  • February, 2015
    3
  • June, 2015
    3
  • April, 2017
    1
  • September, 2014
    1
Available data
  • fastq
    665
  • bam
    507
  • bigWig
    467
  • bed narrowPeak
    228
  • bigBed narrowPeak
    228
  • tsv
    83
  • bed broadPeak
    40
  • bigBed broadPeak
    40
  • bed bedGraph
    30
  • bed bed3+
    25
Experiment status
  • released
    699
  • archived
    28
  • revoked
    17
Organism
  • Homo sapiens
    511
  • Drosophila melanogaster
    30
Biosample type
  • cell line
    537
  • cell-free sample
    158
  • tissue
    4
Organ
  • blood
    284
  • bodily fluid
    284
  • liver
    214
  • embryo
    33
  • adrenal gland
    4
  • uterus
    4
  • connective tissue
    2
Cell
  • cancer cell
    486
  • epithelial cell
    214
  • lymphoblast
    18
  • stem cell
    3
Project
  • ENCODE
    669
  • modENCODE
    30
Genome assembly
  • hg19
    536
  • GRCh38
    459
  • dm3
    30
Lab
  • Gene Yeo, UCSD
    462
  • Chris Burge, MIT
    158
  • Scott Tenenbaum, SUNY-Albany
    42
  • Brenton Graveley, UConn
    30
  • John Rinn, Broad
    7
Audit category:
  • missing possible_controls
    1
Audit category:
  • missing analysis_step_run
    304
  • missing genetic modification characterization
    30
  • antibody characterized with exemption
    7
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

699 results

Clear Filters
eCLIP
RNA Bind-n-Seq
RIP-seq
RIP-chip
iCLIP
Switchgear
cell line
K5622458103
HepG22104
S2R+30
GM12878711
HeLa-S34
cell-free sample
cell-free sample158
tissue
adrenal gland4
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