Experiment matrix
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Assay
- total RNA-seq329
- DNAme array219
- WGBS194
- small RNA-seq190
- RNA Bind-n-Seq158
- ATAC-seq153
- microRNA-seq148
- RAMPAGE140
- microRNA counts114
- siRNA RNA-seq113
- RNA microarray104
- Repli-seq92
- CAGE90
- genotyping array86
- CRISPRi RNA-seq77
- RRBS76
- Repli-chip56
- ChIA-PET55
- CRISPR RNA-seq50
- genetic modification DNase-seq46
- RIP-seq45
- Hi-C44
- PAS-seq34
- FAIRE-seq33
- RIP-chip32
- RNA-PET27
- single cell RNA-seq22
- polyA depleted RNA-seq21
- MS-MS14
- 5C13
- genotyping HTS13
- DNA-PET6
- MRE-seq4
- MeDIP-seq4
- iCLIP3
- whole genome sequencing assay3
- 5' RLM RACE2
- MNase-seq2
- Switchgear2
- Circulome-seq1
Assay category
Target of assay
Date released
- November, 2017419
- October, 2011398
- June, 2014390
- January, 2017373
- November, 2016373
- March, 2016281
- August, 2016250
- July, 2011246
- December, 2014242
- February, 2012237
- July, 2014229
- June, 2017227
- August, 2012221
- November, 2015221
- June, 2016211
- September, 2016207
- February, 2016183
- September, 2012180
- February, 2018172
- April, 2016169
- August, 2015166
- December, 2016165
- January, 2018155
- February, 2011135
- February, 2017135
- December, 2017134
- October, 2017134
- December, 2018129
- March, 2012119
- May, 2012115
- September, 2017115
- March, 2018114
- September, 2011114
- August, 2018110
- January, 2016109
- March, 2011106
- June, 2015100
- November, 201494
- July, 201593
- July, 201291
- October, 201483
- September, 201882
- April, 201180
- August, 201768
- May, 201764
- March, 201762
- November, 201162
- December, 201161
- June, 201161
- April, 201260
- August, 201159
- June, 201858
- February, 201956
- April, 201752
- June, 201250
- October, 201544
- December, 201540
- July, 201739
- January, 201236
- April, 201832
- October, 201830
- December, 201028
- April, 201527
- September, 201422
- May, 201121
- July, 201820
- July, 200916
- September, 201516
- May, 201811
- January, 20199
- January, 20158
- May, 20148
- February, 20147
- November, 20107
- November, 20127
- January, 20116
- May, 20154
- October, 20094
- February, 20153
- April, 20132
- April, 20142
- March, 20152
- May, 20132
- February, 20131
- March, 2013
- November, 20181
Available data
- tsv2023
- bed broadPeak1923
- bigBed broadPeak1560
- tagAlign873
- bed bed3+741
- tar567
- sra273
- bed bedMethyl243
- bigBed bedMethyl243
- idat227
- gtf193
- bed bedRnaElements192
- bigBed bedRnaElements192
- bed tss_peak179
- bigBed tss_peak179
- gff gff3179
- bed bed6+114
- bigBed bed6+114
- rcc114
- bed idr_peak84
- bigBed idr_peak84
- sam59
- wig59
- bed bedLogR40
- bed bed1239
- bigBed bed1239
- bigBed bedLogR39
- bed bedGraph30
- csfasta24
- bed bedExonScore23
- bigBed bedExonScore23
- hic16
- bed bed914
- bigBed bed914
- hdf514
- csqual12
- vcf12
- bed peptideMapping8
- bigBed peptideMapping8
- bed bed37
- bigBed bed37
- bed modPepMap6
- bed pepMap6
- bigBed modPepMap6
- bigBed pepMap6
- bedpe5
- CEL4
- fasta3
- bigBed bed3+2
Experiment status
Organism
Biosample type
Organ
- brain780
- intestine539
- kidney507
- musculature of body476
- limb374
- large intestine346
- heart307
- mammary gland299
- stomach257
- connective tissue252
- skin of body242
- uterus225
- epithelium200
- spleen183
- lymph node166
- extraembryonic component155
- pancreas145
- gonad134
- adipose tissue121
- esophagus115
- adrenal gland107
- prostate gland105
- small intestine95
- arterial blood vessel90
- blood vessel90
- vasculature90
- bone element82
- testis73
- thyroid gland63
- ovary55
- nerve49
- thymus49
- placenta48
- lymphoid tissue46
- breast44
- ureter29
- vagina28
- penis25
- spinal cord22
- mouth19
- eye16
- urinary bladder16
- bone marrow11
- skeleton5
- tongue5
- pericardium2
- nose1
Cell
Lab
- Michael Snyder, Stanford2237
- Bradley Bernstein, Broad1476
- Bing Ren, UCSD1302
- Richard Myers, HAIB1251
- Kevin White, UChicago1144
- John Stamatoyannopoulos, UW1106
- Brenton Graveley, UConn776
- Thomas Gingeras, CSHL603
- Gene Yeo, UCSD462
- Valerie Reinke, Yale361
- Tim Reddy, Duke298
- Susan Celniker, LBNL239
- Ali Mortazavi, UCI230
- Joe Ecker, Salk183
- Barbara Wold, Caltech181
- Joseph Costello, UCSF181
- Chris Burge, MIT158
- Gregory Crawford, Duke116
- Peggy Farnham, USC105
- Xiang-Dong Fu, UCSD94
- Ross Hardison, PennState78
- David Gilbert, FSU70
- Vishwanath Iyer, UTA68
- Manuel Garber, UMass66
- Sherman Weissman, Yale56
- Piero Carninci, RIKEN47
- Yijun Ruan, JAX44
- Scott Tenenbaum, SUNY-Albany42
- Kevin Struhl, HMS41
- Jason Lieb, UNC33
- Eric Lécuyer, IRCM30
- Job Dekker, UMass20
- Morgan Giddings, UNC14
- Erez Lieberman-Aiden, Baylor12
- John Rinn, Broad7
- Andrew Z. Fire, Stanford4
- Alexander Urban, Stanford3
- Brian Oliver, NIH2
Audit category:
Audit category:
Audit category:
- low read length2762
- mild to moderate bottlenecking2647
- missing genetic modification characterization2280
- low read depth2225
- moderate library complexity1204
- inconsistent platforms864
- inconsistent control read length794
- antibody characterized with exemption632
- control low read depth528
- borderline replicate concordance457
- mixed read lengths437
- missing analysis_step_run388
- low spot score280
- missing external identifiers246
- inconsistent target of control experiment217
- inconsistent control run_type143
- missing genotype112
- mixed run types93
- low replicate concordance71
- missing spikeins26
- inconsistent assembly14
- low coverage4
- high lambda C methylation ratio3
month_released!
biosample_type!
BIOSAMPLE