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Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
36
Assay category
DNA binding
36
Target of assay
transcription factor
30
RNA binding protein
14
control
6
Date released
March, 2011
25
August, 2012
9
June, 2016
2
Available data
bam
36
fastq
36
bigWig
34
bed narrowPeak
30
bigBed narrowPeak
30
tar
4
Experiment status
released
36
archived
1
Organism
Homo sapiens
36
Biosample type
cell line
32
primary cell
4
Organ
mammary gland
13
blood
8
bodily fluid
8
embryo
4
epithelium
4
brain
3
lung
3
blood vessel
2
skin of body
2
vasculature
2
vein
2
uterus
1
Cell
cancer cell
21
epithelial cell
17
B cell
5
stem cell
4
endothelial cell
2
keratinocyte
2
lymphoblast
2
Project
ENCODE
36
Genome assembly
hg19
35
GRCh38
34
Lab
Bradley Bernstein, Broad
1167
Bing Ren, UCSD
781
Michael Snyder, Stanford
358
John Stamatoyannopoulos, UW
333
Richard Myers, HAIB
281
Xiang-Dong Fu, UCSD
94
Peggy Farnham, USC
76
Ross Hardison, PennState
59
Vishwanath Iyer, UTA
36
Kevin Struhl, HMS
26
Kevin White, UChicago
13
Barbara Wold, Caltech
3
Sherman Weissman, Yale
3
Audit category:
control extremely low read depth
2
extremely low read depth
2
missing control alignments
2
Audit category:
insufficient read depth
14
missing controlled_by
5
missing possible_controls
5
insufficient read length
4
poor library complexity
4
severe bottlenecking
1
Audit category:
mild to moderate bottlenecking
42
low read length
36
low read depth
26
moderate library complexity
18
control low read depth
5
inconsistent platforms
3
inconsistent control read length
2
borderline replicate concordance
1
mixed read lengths
1
BIOSAMPLE
ASSAY
36 results
Clear Filters
ChIP-seq
cell line
MCF-7
13
H1-hESC
4
A549
3
H54
3
GM12878
2
+ See 7 more…
primary cell
endothelial cell of umbilical vein
2
keratinocyte
2
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