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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 87ChIP-seq
  • 61DNase-seq
Assay category
  • 87DNA binding
  • 61DNA accessibility
Target of assay
  • 73histone
  • 73histone modification
  • 44broad histone mark
  • 29narrow histone mark
  • 8control
  • 6transcription factor
  • 5chromatin remodeller
  • 3RNA binding protein
  • 2other post-translational modification
Date released
  • 29January, 2017
  • 24August, 2015
  • 22May, 2016
  • 19November, 2016
  • 5July, 2012
  • 5July, 2016
  • 5September, 2016
  • 4December, 2016
  • 4July, 2014
  • 4June, 2012
  • 4November, 2015
  • 4October, 2015
  • 4October, 2016
  • 3December, 2010
  • 2March, 2012
  • 2May, 2011
  • 1August, 2012
  • 1August, 2016
  • 1February, 2011
  • 1February, 2016
  • 1June, 2016
  • 1March, 2015
  • 1March, 2016
  • 1September, 2015
Available data
  • 148bam
  • 148fastq
  • 140bigWig
  • 139bed narrowPeak
  • 136bigBed narrowPeak
  • 54bed broadPeak
  • 54bigBed broadPeak
  • 1tagAlign
Organism
  • 141Homo sapiens
  • 7Mus musculus
Biosample type
  • 94immortalized cell line
  • 19tissue
  • 16primary cell
  • 12in vitro differentiated cells
  • 4induced pluripotent stem cell line
  • 3stem cell
Organ
  • 9brain
  • 6connective tissue
  • 4eye
  • 4skin of body
  • 3lung
  • 2kidney
  • 1heart
  • 1intestine
  • 1mammary gland
  • 1mouth
  • 1stomach
Project
  • 148ENCODE
Genome assembly (visualization)
  • 110hg19
  • 106GRCh38
  • 6mm10
  • 1mm10-minimal
Audit category:
  • 8extremely low spot score
  • 2extremely low read length
  • 1control extremely low read depth
Audit category:
  • 33missing controlled_by
  • 32insufficient read depth
  • 18control insufficient read depth
  • 11poor library complexity
  • 10severe bottlenecking
  • 7unreplicated experiment
  • 5insufficient spot score
  • 5partially characterized antibody
  • 4insufficient replicate concordance
  • 2control low read depth
  • 2insufficient read length
  • 2uncharacterized antibody
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

148 results

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Clear Filters
ChIP-seq
DNase-seq
immortalized cell line
HCT11612
KMS-1110
PC-99
SK-N-SH8
A6737
tissue
brain2
eye2
lung2
retina2
caudate nucleus1
primary cell
fibroblast of arm3
T-helper 1 cell2
T-helper 2 cell2
skeletal muscle myoblast11
T-helper 17 cell1
in vitro differentiated cells
hematopoietic multipotent progenitor cell3
neural cell2
neural progenitor cell2
acute myeloid leukemia1
adipocyte1
induced pluripotent stem cell line
induced pluripotent stem cell4
stem cell
ELF-11
H91
R11
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