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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 55polyA mRNA RNA-seq
  • 50siRNA RNA-seq
  • 5total RNA-seq
Assay category
  • 110Transcription
Target of assay
  • 34transcription factor
  • 16control
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 40October, 2016
  • 18February, 2012
  • 16May, 2012
  • 10April, 2016
  • 10August, 2011
  • 6January, 2017
  • 5February, 2011
  • 4November, 2016
  • 1January, 2012
Available data
  • 110bam
  • 110bigWig
  • 110fastq
  • 110tsv
  • 17gtf
Organism
  • 84Homo sapiens
  • 26Mus musculus
Biosample type
  • 85immortalized cell line
  • 18tissue
  • 4primary cell
  • 2stem cell
  • 1in vitro differentiated cells
Organ
  • 4brain
  • 2bone element
  • 2connective tissue
  • 2heart
  • 2liver
  • 1adipose tissue
  • 1blood vessel
  • 1extraembryonic component
  • 1gonad
  • 1intestine
  • 1kidney
  • 1lung
  • 1placenta
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1testis
  • 1thymus
  • 1vein
Project
  • 110ENCODE
Genome assembly (visualization)
  • 84GRCh38
  • 34hg19
  • 26mm10
Audit category:
  • 40insufficient read length
  • 26insufficient read depth
  • 10missing documents
  • 5missing spikeins
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

110 results

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Clear Filters
polyA mRNA RNA-seq
siRNA RNA-seq
total RNA-seq
immortalized cell line
K5626505
A5494
Ishikawa4
T47D4
C3H10T1/22
tissue
heart2
liver2
bone marrow1
brain1
brown adipose tissue1
primary cell
bone marrow macrophage1
embryonic fibroblast1
endothelial cell of umbilical vein1
keratinocyte1
stem cell
ES-Bruce41
H1-hESC1
in vitro differentiated cells
myocyte1
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