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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 67ChIP-seq
  • 8small RNA-seq
  • 6polyA mRNA RNA-seq
  • 4CAGE
  • 4total RNA-seq
Assay category
  • 67DNA binding
  • 22Transcription
Target of assay
  • 36control
  • 31recombinant protein
  • 31transcription factor
Date released
  • 56May, 2016
  • 22March, 2014
  • 5September, 2016
  • 4January, 2017
  • 2July, 2016
Available data
  • 89fastq
  • 71bam
  • 70bigWig
  • 31bed narrowPeak
  • 31bigBed narrowPeak
Organism
  • 63Caenorhabditis elegans
  • 22Drosophila melanogaster
  • 4Drosophila pseudoobscura
Biosample type
  • 69whole organisms
  • 18immortalized cell line
  • 2tissue
Organ
  • 2gonad
  • 1ovary
  • 1testis
Project
  • 67modERN
  • 22modENCODE
Genome assembly (visualization)
  • 63ce11
  • 62ce10
  • 7dm3
  • 4dm6
Audit category:
  • 4missing controlled_by
  • 4missing possible_controls
  • 1poor library complexity
  • 1severe bottlenecking
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

89 results

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Clear Filters
ChIP-seq
small RNA-seq
polyA mRNA RNA-seq
CAGE
total RNA-seq
whole organisms
whole organism67
carcass2
immortalized cell line
CME-W1-Cl.8+811
CME-L111
CME-W211
GM211
OSC1
tissue
ovary1
testis1
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