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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 2377ChIP-seq
Assay category
  • 2377DNA binding
Target of assay
  • 1123histone
  • 1123histone modification
  • 1063transcription factor
  • 589narrow histone mark
  • 481broad histone mark
  • 274RNA binding protein
  • 182control
  • 165recombinant protein
  • 113chromatin remodeller
  • 13other post-translational modification
  • 9other context
Date released
  • 322July, 2013
  • 143July, 2011
  • 128January, 2017
  • 124August, 2012
  • 124July, 2014
  • 117November, 2016
  • 108February, 2011
  • 105June, 2014
  • 101May, 2016
  • 88July, 2016
  • 80October, 2016
  • 63March, 2012
  • 53June, 2017
  • 53March, 2016
  • 50December, 2016
  • 49March, 2011
  • 49October, 2011
  • 48February, 2012
  • 46June, 2015
  • 42March, 2017
  • 41September, 2016
  • 39September, 2012
  • 38November, 2015
  • 37June, 2016
  • 36December, 2014
  • 35February, 2017
  • 35November, 2011
  • 27April, 2012
  • 23May, 2012
  • 21May, 2017
  • 21September, 2011
  • 20April, 2016
  • 20April, 2017
  • 17January, 2012
  • 14June, 2012
  • 13August, 2016
  • 11June, 2011
  • 11September, 2014
  • 10February, 2016
  • 4August, 2015
  • 3January, 2016
  • 3May, 2011
  • 1December, 2015
  • 1February, 2014
  • 1March, 2014
  • 1November, 2014
  • 1October, 2014
Available data
  • 2358fastq
  • 2316bam
  • 2068bigWig
  • 1987bed narrowPeak
  • 1977bigBed narrowPeak
  • 677bed broadPeak
  • 539bigBed broadPeak
  • 325tagAlign
  • 4tar
  • 1bed bed9
  • 1bigBed bed9
Organism
  • 1732Homo sapiens
  • 512Mus musculus
  • 67Drosophila melanogaster
  • 66Caenorhabditis elegans
Biosample type
  • 913immortalized cell line
  • 770tissue
  • 238primary cell
  • 176in vitro differentiated cells
  • 133whole organisms
  • 119stem cell
  • 28induced pluripotent stem cell line
Organ
  • 137brain
  • 88embryonic structure
  • 83connective tissue
  • 81heart
  • 77liver
  • 66muscle organ
  • 62skin of body
  • 55intestine
  • 48blood vessel
  • 37stomach
  • 36lung
  • 31esophagus
  • 28large intestine
  • 25extraembryonic component
  • 23kidney
  • 23spleen
  • 21adrenal gland
  • 18pancreas
  • 17adipose tissue
  • 17gonad
  • 14vein
  • 13breast
  • 12small intestine
  • 12thyroid gland
  • 11prostate gland
  • 10thymus
  • 9mammary gland
  • 9testis
  • 9vagina
  • 8ovary
  • 7artery
  • 7bone element
  • 6penis
  • 5uterus
  • 4placenta
  • 3urinary bladder
  • 2bronchus
  • 2mouth
  • 2spinal cord
  • 1eye
Project
  • 1921ENCODE
  • 323Roadmap
  • 133modERN
Genome assembly (visualization)
  • 1253GRCh38
  • 1114hg19
  • 490mm10
  • 175mm9
  • 67dm3
  • 67dm6
  • 66ce10
  • 66ce11
Audit category:
  • 39extremely low read depth
  • 36control extremely low read depth
  • 4extremely low read length
Audit category:
  • 690insufficient read depth
  • 318control insufficient read depth
  • 209missing controlled_by
  • 203poor library complexity
  • 190severe bottlenecking
  • 120control low read depth
  • 48insufficient read length
  • 42partially characterized antibody
  • 31insufficient replicate concordance
  • 10missing possible_controls
  • 10uncharacterized antibody
  • 7antibody not characterized to standard
  • 5unreplicated experiment
  • 2missing documents
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

2377 results

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Clear Filters
ChIP-seq
immortalized cell line
K562214
GM12878103
HepG265
A54961
MCF-761
tissue
liver61
heart48
midbrain39
hindbrain38
forebrain34
primary cell
common myeloid progenitor, CD34-positive24
IMR-9019
B cell17
endothelial cell of umbilical vein14
CD14-positive monocyte13
in vitro differentiated cells
mesenchymal stem cell21
trophoblast cell21
neural cell20
neuronal stem cell17
hepatocyte12
whole organisms
whole organism133
stem cell
H1-hESC66
H915
ES-E1411
ES-I36
ES-Bruce45
induced pluripotent stem cell line
induced pluripotent stem cell7
iPS-20b6
iPS DF 19.115
iPS-18c5
iPS-15b2
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