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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 162DNase-seq
  • 3genetic modification DNase-seq
Assay category
  • 165DNA accessibility
Date released
  • 65July, 2013
  • 15May, 2016
  • 12September, 2015
  • 11August, 2012
  • 10March, 2012
  • 6August, 2015
  • 6December, 2010
  • 6May, 2011
  • 4August, 2016
  • 4October, 2015
  • 3April, 2013
  • 3November, 2015
  • 3September, 2012
  • 3September, 2016
  • 2April, 2011
  • 2July, 2012
  • 2July, 2016
  • 2October, 2011
  • 1February, 2013
  • 1July, 2011
  • 1June, 2015
  • 1June, 2016
  • 1May, 2013
  • 1November, 2016
Available data
  • 165bam
  • 165bed narrowPeak
  • 165bigBed narrowPeak
  • 165fastq
  • 146bed broadPeak
  • 146bigBed broadPeak
  • 100bigWig
  • 12tagAlign
  • 1tar
Organism
  • 138Homo sapiens
  • 27Mus musculus
Biosample type
  • 82tissue
  • 31primary cell
  • 30immortalized cell line
  • 13in vitro differentiated cells
  • 6stem cell
  • 3induced pluripotent stem cell line
Organ
  • 17kidney
  • 17muscle organ
  • 14brain
  • 12lung
  • 10embryonic structure
  • 9skin of body
  • 7connective tissue
  • 5heart
  • 4ureter
  • 3blood vessel
  • 3extraembryonic component
  • 3eye
  • 3intestine
  • 2penis
  • 2small intestine
  • 2thymus
  • 1adrenal gland
  • 1bronchus
  • 1large intestine
  • 1liver
  • 1placenta
  • 1spleen
  • 1stomach
  • 1thyroid gland
Project
  • 100ENCODE
  • 65Roadmap
Genome assembly (visualization)
  • 119GRCh38
  • 118hg19
  • 27mm10
Audit category:
  • 19extremely low spot score
  • 4extremely low read depth
Audit category:
  • 20insufficient spot score
  • 9unreplicated experiment
  • 1insufficient read length
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

165 results

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Clear Filters
DNase-seq
genetic modification DNase-seq
tissue
left lung8
renal cortex interstitium6
muscle of leg5
heart4
muscle of back4
primary cell
common myeloid progenitor, CD34-positive8
skin fibroblast5
B cell2
CD14-positive monocyte2
IMR-902
immortalized cell line
K56233
SJCRH302
SK-N-SH2
3T3-L11
CH12.LX1
in vitro differentiated cells
hematopoietic multipotent progenitor cell4
cardiac mesoderm3
adipocyte2
bipolar neuron1
hepatocyte1
stem cell
H93
ELF-11
ES-E141
WW61
induced pluripotent stem cell line
induced pluripotent stem cell2
L1-S81
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