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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 38small RNA-seq
  • 26polyA mRNA RNA-seq
  • 17total RNA-seq
  • 4polyA depleted RNA-seq
  • 4siRNA RNA-seq
Assay category
  • 89Transcription
Target of assay
  • 4transcription factor
  • 1RNA binding protein
Date released
  • 16June, 2014
  • 14July, 2012
  • 10February, 2012
  • 10May, 2012
  • 8August, 2012
  • 6October, 2011
  • 5November, 2014
  • 4January, 2017
  • 3June, 2012
  • 3September, 2014
  • 2August, 2011
  • 2November, 2010
  • 2October, 2015
  • 2October, 2016
  • 1December, 2014
  • 1January, 2015
Available data
  • 89bam
  • 89bigWig
  • 89fastq
  • 89tsv
  • 35bed bedRnaElements
  • 35bigBed bedRnaElements
  • 31gtf
Organism
  • 59Homo sapiens
  • 30Mus musculus
Biosample type
  • 32immortalized cell line
  • 28tissue
  • 23primary cell
  • 3in vitro differentiated cells
  • 2stem cell
  • 1induced pluripotent stem cell line
Organ
  • 6connective tissue
  • 4heart
  • 4skin of body
  • 3blood vessel
  • 3brain
  • 2bone element
  • 2extraembryonic component
  • 2liver
  • 2lung
  • 2thyroid gland
  • 1adipose tissue
  • 1artery
  • 1gonad
  • 1intestine
  • 1kidney
  • 1mammary gland
  • 1mouth
  • 1penis
  • 1placenta
  • 1small intestine
  • 1spinal cord
  • 1testis
  • 1thymus
  • 1tongue
  • 1uterus
  • 1vein
Project
  • 89ENCODE
Genome assembly (visualization)
  • 59GRCh38
  • 55hg19
  • 30mm10
Audit category:
  • 26insufficient read length
  • 15insufficient read depth
  • 1missing documents
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

89 results

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Clear Filters
small RNA-seq
polyA mRNA RNA-seq
total RNA-seq
polyA depleted RNA-seq
siRNA RNA-seq
immortalized cell line
K562314
HeLa-S331
A5493
HepG2111
MEL cell line3
tissue
heart111
liver2
thyroid gland11
bone marrow1
brain1
primary cell
IMR-9041
erythroblast2
erythroid progenitor cell2
skeletal muscle myoblast11
B cell1
in vitro differentiated cells
bipolar neuron1
hematopoietic multipotent progenitor cell1
neural progenitor cell1
stem cell
hematopoietic stem cell1
leukemia stem cell1
induced pluripotent stem cell line
induced pluripotent stem cell1
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