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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 241ChIP-seq
Assay category
  • 241DNA binding
Target of assay
  • 235transcription factor
  • 20RNA binding protein
  • 8chromatin remodeller
  • 6histone
  • 6histone modification
  • 6other context
  • 6other post-translational modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 59October, 2011
  • 53August, 2012
  • 52May, 2012
  • 33September, 2011
  • 12December, 2014
  • 10July, 2011
  • 10June, 2012
  • 5February, 2011
  • 5February, 2012
  • 2April, 2017
Available data
  • 241bam
  • 241bed narrowPeak
  • 241bigBed narrowPeak
  • 241bigWig
  • 241fastq
  • 13bed broadPeak
  • 13bigBed broadPeak
Organism
  • 157Homo sapiens
  • 84Mus musculus
Biosample type
  • 211immortalized cell line
  • 18stem cell
  • 10primary cell
  • 2tissue
Organ
  • 2liver
Project
  • 241ENCODE
Genome assembly (visualization)
  • 86GRCh38
  • 84mm10
  • 79mm9
  • 32hg19
Audit category:
  • 1extremely low read depth
Audit category:
  • 130missing controlled_by
  • 20insufficient read depth
  • 5insufficient replicate concordance
  • 4insufficient read length
  • 3poor library complexity
  • 3severe bottlenecking
  • 2missing input control
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

241 results

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ChIP-seq
immortalized cell line
MEL cell line46
K56241
CH12.LX38
GM1287832
HepG224
stem cell
H1-hESC18
primary cell
IMR-9010
tissue
liver2
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