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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
Assay category
  • 128DNA binding
Target of assay
  • 120histone
  • 120histone modification
  • 72broad histone mark
  • 48narrow histone mark
  • 8transcription factor
  • 6chromatin remodeller
  • 3RNA binding protein
  • 3other post-translational modification
Date released
  • 32January, 2017
  • 26November, 2016
  • 22May, 2016
  • 15July, 2014
  • 10October, 2016
  • 7December, 2016
  • 7June, 2016
  • 3July, 2016
  • 1August, 2012
  • 1February, 2016
  • 1February, 2017
  • 1June, 2017
  • 1March, 2016
  • 1March, 2017
Available data
  • 128bam
  • 128fastq
  • 126bed narrowPeak
  • 126bigBed narrowPeak
  • 126bigWig
  • 1bed broadPeak
  • 1bigBed broadPeak
Organism
  • 127Homo sapiens
  • 1Mus musculus
Biosample type
  • 83immortalized cell line
  • 18in vitro differentiated cells
  • 16primary cell
  • 5stem cell
  • 4induced pluripotent stem cell line
  • 2tissue
Organ
  • 14skin of body
  • 13connective tissue
  • 1intestine
  • 1mammary gland
  • 1stomach
Project
  • 128ENCODE
Genome assembly (visualization)
  • 125hg19
  • 122GRCh38
  • 1mm10
Audit category:
  • 1control extremely low read depth
  • 1extremely low read length
Audit category:
  • 53missing controlled_by
  • 52insufficient read depth
  • 29control insufficient read depth
  • 10poor library complexity
  • 9severe bottlenecking
  • 6partially characterized antibody
  • 4uncharacterized antibody
  • 3insufficient replicate concordance
  • 2control low read depth
  • 2insufficient read length
  • 2unreplicated experiment
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

128 results

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Clear Filters
ChIP-seq
immortalized cell line
HCT11612
OCI-LY312
KMS-1111
PC-99
SK-N-SH8
in vitro differentiated cells
neural progenitor cell13
neural cell2
bipolar neuron1
cardiac muscle cell1
mid-neurogenesis radial glial cells1
primary cell
fibroblast of arm13
keratinocyte1
mammary epithelial cell1
skeletal muscle myoblast1
stem cell
H95
induced pluripotent stem cell line
induced pluripotent stem cell4
tissue
intestine1
stomach1
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