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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 335ChIP-seq
Assay category
  • 335DNA binding
Target of assay
  • 324transcription factor
  • 67RNA binding protein
  • 56recombinant protein
  • 54chromatin remodeller
  • 4other post-translational modification
  • 2other context
Date released
  • 36November, 2016
  • 34July, 2011
  • 31July, 2014
  • 24October, 2011
  • 23October, 2016
  • 21June, 2016
  • 16February, 2012
  • 14August, 2012
  • 14September, 2016
  • 13December, 2016
  • 13June, 2017
  • 12January, 2017
  • 10May, 2012
  • 9May, 2017
  • 8April, 2017
  • 8February, 2017
  • 8March, 2016
  • 7July, 2016
  • 6March, 2012
  • 3February, 2011
  • 3June, 2012
  • 3September, 2011
  • 3September, 2012
  • 2April, 2012
  • 2August, 2016
  • 2February, 2016
  • 2March, 2014
  • 2March, 2017
  • 1April, 2016
  • 1December, 2014
  • 1January, 2012
  • 1January, 2016
  • 1March, 2011
  • 1May, 2016
Available data
  • 333fastq
  • 326bam
  • 326bed narrowPeak
  • 326bigBed narrowPeak
  • 326bigWig
  • 71bed broadPeak
  • 71bigBed broadPeak
  • 1fasta
Organism
  • 304Homo sapiens
  • 26Mus musculus
  • 3Drosophila melanogaster
  • 2Caenorhabditis elegans
Biosample type
  • 285immortalized cell line
  • 23stem cell
  • 10primary cell
  • 9tissue
  • 5whole organisms
  • 2in vitro differentiated cells
  • 1induced pluripotent stem cell line
Organ
  • 5liver
  • 3connective tissue
  • 2bone element
  • 2brain
  • 2lung
  • 1blood vessel
  • 1mammary gland
  • 1thymus
  • 1vein
Project
  • 330ENCODE
  • 5modERN
Genome assembly (visualization)
  • 281GRCh38
  • 244hg19
  • 26mm10
  • 21mm9
  • 3dm3
  • 3dm6
  • 2ce10
  • 2ce11
Audit category:
  • 3control extremely low read depth
  • 3extremely low read depth
  • 3extremely low read length
Audit category:
  • 52insufficient read depth
  • 34missing controlled_by
  • 20control low read depth
  • 19partially characterized antibody
  • 16severe bottlenecking
  • 14poor library complexity
  • 12insufficient read length
  • 6antibody not characterized to standard
  • 6uncharacterized antibody
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

335 results

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Clear Filters
ChIP-seq
immortalized cell line
K56292
HepG251
GM1287831
HEK29329
MCF-721
stem cell
H1-hESC18
E14TG2a.42
ES-E142
ES-Bruce41
primary cell
IMR-902
B cell1
CD14-positive monocyte1
bone marrow macrophage1
embryonic fibroblast1
tissue
liver4
cerebellum2
bone marrow1
lung1
thymus1
whole organisms
whole organism5
in vitro differentiated cells
bipolar neuron1
hepatocyte1
induced pluripotent stem cell line
induced pluripotent stem cell1
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