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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 535ChIP-seq
  • 23ChIA-PET
  • 2eCLIP
Assay category
  • 535DNA binding
  • 233D chromatin structure
  • 2RNA binding
Target of assay
  • 463transcription factor
  • 110RNA binding protein
  • 94histone
  • 94histone modification
  • 84recombinant protein
  • 58broad histone mark
  • 36narrow histone mark
  • 8other context
  • 8other post-translational modification
  • 1chromatin remodeller
Date released
  • 114November, 2016
  • 68June, 2017
  • 49July, 2014
  • 47October, 2016
  • 41January, 2017
  • 36June, 2016
  • 33December, 2016
  • 33July, 2016
  • 21May, 2016
  • 20June, 2014
  • 20March, 2017
  • 18September, 2016
  • 15April, 2017
  • 11August, 2016
  • 10March, 2016
  • 6April, 2016
  • 5February, 2017
  • 4February, 2016
  • 4May, 2017
  • 4September, 2014
  • 1January, 2016
Available data
  • 559fastq
  • 535bam
  • 389bed narrowPeak
  • 389bigBed narrowPeak
  • 389bigWig
  • 5bed bed3
  • 5bigBed bed3
  • 5tsv
Organism
  • 525Homo sapiens
  • 35Mus musculus
Biosample type
  • 265immortalized cell line
  • 260tissue
  • 20in vitro differentiated cells
  • 8induced pluripotent stem cell line
  • 6primary cell
  • 1stem cell
Organ
  • 36intestine
  • 33liver
  • 28large intestine
  • 28stomach
  • 24muscle organ
  • 19skin of body
  • 18lung
  • 16esophagus
  • 15connective tissue
  • 13adipose tissue
  • 10brain
  • 9breast
  • 9gonad
  • 9heart
  • 8adrenal gland
  • 8pancreas
  • 8spleen
  • 6prostate gland
  • 6vagina
  • 5ovary
  • 5thyroid gland
  • 4blood vessel
  • 4testis
  • 4uterus
  • 2artery
  • 2kidney
  • 1embryonic structure
Project
  • 560ENCODE
Genome assembly (visualization)
  • 357hg19
  • 352GRCh38
  • 35mm10
Audit category:
  • 54insufficient read depth
  • 37control insufficient read depth
  • 27severe bottlenecking
  • 23poor library complexity
  • 11missing controlled_by
  • 8unreplicated experiment
  • 1missing input control
  • 1partially characterized antibody
Audit category:
  • 2781low read length
  • 2377mild to moderate bottlenecking
  • 1798low read depth
  • 1068moderate library complexity
  • 945inconsistent platforms
  • 828inconsistent control read length
  • 730control low read depth
  • 560antibody characterized with exemption
  • 467mixed read lengths
  • 382insufficient read depth
  • 335borderline replicate concordance
  • 306missing external identifiers
  • 241inconsistent target of control experiment
  • 165low spot score
  • 148mixed run types
  • 128inconsistent control run_type
  • 110missing spikeins
  • 89low replicate concordance
  • 89missing genotype
  • 9missing tag construct
  • 1high lambda C methylation ratio
BIOSAMPLE
ASSAY

560 results

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Clear Filters
ChIP-seq
ChIA-PET
eCLIP
immortalized cell line
HepG21021
K562374
MCF-7221
GM12878202
A5498
tissue
liver30
stomach17
sigmoid colon14
transverse colon14
upper lobe of left lung12
in vitro differentiated cells
neural cell8
bipolar neuron6
neural progenitor cell2
smooth muscle cell2
hepatocyte1
induced pluripotent stem cell line
induced pluripotent stem cell8
primary cell
IMR-902
fibroblast of arm2
B cell1
epithelial cell of prostate1
stem cell
H91
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