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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    50
Assay category
  • DNA binding
    50
Target of assay
  • transcription factor
    3135
  • control
    2525
  • histone
    2458
  • broad histone mark
    1442
  • RNA binding protein
    1271
  • recombinant protein
    1140
  • narrow histone mark
    945
  • chromatin remodeller
    147
  • other post-translational modification
    57
  • other context
    50
  • nucleotide modification
    4
  • tag
    1
Date released
  • October, 2017
    20
  • February, 2012
    6
  • November, 2016
    6
  • July, 2011
    4
  • October, 2011
    3
  • May, 2012
    2
  • September, 2011
    2
  • September, 2012
    2
  • August, 2016
    1
  • March, 2018
    1
  • November, 2011
    1
  • November, 2017
    1
  • October, 2016
    1
Available data
  • bam
    50
  • bed narrowPeak
    50
  • bigBed narrowPeak
    50
  • bigWig
    50
  • fastq
    50
  • bed broadPeak
    12
  • bigBed broadPeak
    12
Experiment status
  • released
    50
  • revoked
    1
Organism
  • Homo sapiens
    44
  • Mus musculus
    6
Biosample type
  • tissue
    28
  • cell line
    19
  • in vitro differentiated cells
    3
Organ
  • blood
    8
  • bodily fluid
    8
  • intestine
    7
  • large intestine
    7
  • musculature of body
    5
  • spleen
    5
  • skin of body
    4
  • stomach
    4
  • breast
    3
  • epithelium
    3
  • esophagus
    3
  • lung
    3
  • brain
    2
  • liver
    2
  • prostate gland
    2
  • embryo
    1
  • lymph node
    1
  • uterus
    1
  • vagina
    1
Cell
  • cancer cell
    9
  • stem cell
    4
  • B cell
    3
  • epithelial cell
    2
  • neural cell
    2
  • induced pluripotent stem cell
    1
  • lymphoblast
    1
  • neuroblastoma cell
    1
Project
  • ENCODE
    50
Genome assembly
  • hg19
    44
  • GRCh38
    42
  • mm10
    6
  • mm9
    3
Lab
  • Richard Myers, HAIB
    39
  • Michael Snyder, Stanford
    7
  • Ross Hardison, PennState
    3
  • Barbara Wold, Caltech
    1
Audit category:
  • insufficient read length
    2
  • missing controlled_by
    2
  • insufficient read depth
    1
  • insufficient replicate concordance
    1
Audit category:
  • antibody characterized with exemption
    31
  • low read depth
    23
  • low read length
    22
  • mild to moderate bottlenecking
    12
  • moderate library complexity
  • inconsistent target of control experiment
    6
  • control low read depth
    5
  • inconsistent control read length
    5
  • inconsistent platforms
    5
  • borderline replicate concordance
    2
  • mixed read lengths
    1
audit.WARNING.category!
  • moderate library complexity
BIOSAMPLE
ASSAY

50 results

Clear Filters
ChIP-seq
tissue
sigmoid colon4
breast epithelium3
esophagus muscularis mucosa3
spleen3
stomach3
cell line
HepG22
K5622
MEL cell line2
A5491
CH12.LX1
in vitro differentiated cells
bipolar neuron1
myocyte1
neural cell1
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