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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • WGBS
    3
Assay category
  • DNA methylation
    3
Date released
  • July, 2013
    3
Available data
  • bam
    3
  • bed bedMethyl
    3
  • bigBed bedMethyl
    3
  • bigWig
    3
  • fastq
    3
Experiment status
  • released
    3
Organism
  • Homo sapiens
    3
Biosample type
  • cell line
    3
Organ
  • embryo
    3
Cell
  • stem cell
    3
Project
  • Roadmap
    3
Genome assembly
  • GRCh38
    3
Lab
  • Joe Ecker, Salk
    2
  • Bradley Bernstein, Broad
    1
Audit category:
  • extremely low coverage
    2
Audit category:
  • insufficient read length
    2
  • insufficient coverage
    1
Audit category:
  • low read length
    3230
  • mild to moderate bottlenecking
    2930
  • low read depth
    2538
  • missing genetic modification characterization
    2280
  • moderate library complexity
  • inconsistent platforms
    1061
  • inconsistent control read length
    866
  • control low read depth
    654
  • antibody characterized with exemption
    637
  • mixed read lengths
    467
  • borderline replicate concordance
    465
  • missing analysis_step_run
    388
  • low spot score
    322
  • missing external identifiers
    246
  • inconsistent target of control experiment
    217
  • inconsistent control run_type
    147
  • missing genotype
    112
  • mixed run types
    98
  • low replicate concordance
    89
  • missing spikeins
    28
  • inconsistent assembly
    17
  • low coverage
    4
  • high lambda C methylation ratio
    3
audit.WARNING.category!
  • moderate library complexity
BIOSAMPLE
ASSAY

3 results

Clear Filters
WGBS
cell line
H1-hESC1
H91
HUES641
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