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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 5RIP-seq
Assay category
  • 15DNA binding
  • 5RNA binding
Target of assay
  • 10transcription factor
  • 9broad histone mark
  • 9histone
  • 9histone modification
  • 8chromatin remodeller
  • 5RNA binding protein
Date released
  • 8May, 2016
  • 4January, 2017
  • 3July, 2014
  • 2December, 2016
  • 1June, 2016
  • 1March, 2017
  • 1September, 2014
Available data
  • 19fastq
  • 18bam
  • 13bed narrowPeak
  • 13bigBed narrowPeak
  • 13bigWig
  • 5tsv
Organism
  • 20Homo sapiens
Biosample type
  • 13immortalized cell line
  • 3in vitro differentiated cells
  • 3stem cell
  • 1induced pluripotent stem cell line
Project
  • 20ENCODE
Genome assembly (visualization)
  • 13hg19
  • 12GRCh38
Audit category:
  • 1extremely low read length
Audit category:
  • 1415insufficient read depth
  • 838control insufficient read depth
  • 579missing controlled_by
  • 476insufficient read length
  • 310unreplicated experiment
  • 209poor library complexity
  • 202control low read depth
  • 197severe bottlenecking
  • 120insufficient spot score
  • 102partially characterized antibody
  • 82missing possible_controls
  • 66missing RNA fragment size
  • 47insufficient replicate concordance
  • 44missing documents
  • 20uncharacterized antibody
  • 17antibody not characterized to standard
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 14low read length
  • 10mild to moderate bottlenecking
  • 8inconsistent control read length
  • 7low read depth
  • 7mixed read lengths
  • 6borderline replicate concordance
  • 4inconsistent control run_type
  • 4moderate library complexity
  • 2mixed run types
  • 1control low read depth
  • 1inconsistent platforms
BIOSAMPLE
ASSAY

20 results

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Clear Filters
ChIP-seq
RIP-seq
immortalized cell line
K56215
A6731
ACC1121
DOHH21
HeLa-S31
in vitro differentiated cells
mid-neurogenesis radial glial cells1
neural cell1
radial glial cell1
stem cell
H1-hESC2
H91
induced pluripotent stem cell line
induced pluripotent stem cell1
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