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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
5
RIP-seq
Assay category
15
DNA binding
5
RNA binding
Target of assay
10
transcription factor
9
broad histone mark
9
histone
9
histone modification
8
chromatin remodeller
5
RNA binding protein
Date released
8
May, 2016
4
January, 2017
3
July, 2014
2
December, 2016
1
June, 2016
1
March, 2017
1
September, 2014
Available data
19
fastq
18
bam
13
bed narrowPeak
13
bigBed narrowPeak
13
bigWig
5
tsv
Organism
20
Homo sapiens
Biosample type
13
immortalized cell line
3
in vitro differentiated cells
3
stem cell
1
induced pluripotent stem cell line
Project
20
ENCODE
Genome assembly (visualization)
13
hg19
12
GRCh38
Audit category:
1
extremely low read length
Audit category:
1415
insufficient read depth
838
control insufficient read depth
579
missing controlled_by
476
insufficient read length
310
unreplicated experiment
209
poor library complexity
202
control low read depth
197
severe bottlenecking
120
insufficient spot score
102
partially characterized antibody
82
missing possible_controls
66
missing RNA fragment size
47
insufficient replicate concordance
44
missing documents
20
uncharacterized antibody
17
antibody not characterized to standard
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
14
low read length
10
mild to moderate bottlenecking
8
inconsistent control read length
7
low read depth
7
mixed read lengths
6
borderline replicate concordance
4
inconsistent control run_type
4
moderate library complexity
2
mixed run types
1
control low read depth
1
inconsistent platforms
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
RIP-seq
immortalized cell line
K562
1
5
A673
1
ACC112
1
DOHH2
1
HeLa-S3
1
+ See 3 more…
in vitro differentiated cells
mid-neurogenesis radial glial cells
1
neural cell
1
radial glial cell
1
stem cell
H1-hESC
2
H9
1
induced pluripotent stem cell line
induced pluripotent stem cell
1
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