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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
polyA mRNA RNA-seq
2
total RNA-seq
Assay category
10
Transcription
Date released
5
February, 2011
2
November, 2010
1
January, 2012
1
July, 2013
1
November, 2016
Available data
10
bam
10
bigWig
10
fastq
10
tsv
1
csfasta
1
csqual
Organism
10
Homo sapiens
Biosample type
5
immortalized cell line
3
stem cell
2
primary cell
Organ
1
blood vessel
1
vein
Project
8
ENCODE
2
Roadmap
Genome assembly (visualization)
10
GRCh38
10
hg19
Audit category:
1415
insufficient read depth
838
control insufficient read depth
579
missing controlled_by
476
insufficient read length
310
unreplicated experiment
209
poor library complexity
202
control low read depth
197
severe bottlenecking
120
insufficient spot score
102
partially characterized antibody
82
missing possible_controls
66
missing RNA fragment size
47
insufficient replicate concordance
44
missing documents
20
uncharacterized antibody
17
antibody not characterized to standard
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
6
low read depth
5
missing spikeins
1
inconsistent platforms
BIOSAMPLE
ASSAY
10 results
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polyA mRNA RNA-seq
total RNA-seq
immortalized cell line
K562
2
GM12878
1
HeLa-S3
1
HepG2
1
stem cell
H1-hESC
2
1
primary cell
IMR-90
1
endothelial cell of umbilical vein
1
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