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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 57siRNA RNA-seq
  • 15ChIP-seq
  • 9CAGE
  • 1RIP-seq
Assay category
  • 66Transcription
  • 15DNA binding
  • 1RNA binding
Target of assay
  • 68RNA binding protein
  • 11transcription factor
  • 4histone
  • 4histone modification
  • 3narrow histone mark
  • 1broad histone mark
  • 1tag
Date released
  • 63March, 2014
  • 6January, 2012
  • 6March, 2011
  • 3December, 2011
  • 3July, 2013
  • 1April, 2012
Available data
  • 79fastq
  • 57sam
  • 57wig
  • 17bam
  • 16bigWig
  • 12bed narrowPeak
  • 12bigBed narrowPeak
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 4bed bedRnaElements
  • 4bigBed bedRnaElements
  • 4gtf
  • 3sra
  • 1bed bedGraph
Organism
  • 59Drosophila melanogaster
  • 19Homo sapiens
  • 4Drosophila pseudoobscura
Biosample type
  • 73immortalized cell line
  • 3primary cell
  • 3tissue
  • 2whole organisms
  • 1stem cell
Organ
  • 2gonad
  • 1ovary
  • 1testis
Project
  • 63modENCODE
  • 16ENCODE
  • 3Roadmap
Audit category:
  • 1extremely low read depth
  • 0missing possible_controls
Audit category:
  • 1415insufficient read depth
  • 838control insufficient read depth
  • 579missing controlled_by
  • 476insufficient read length
  • 310unreplicated experiment
  • 209poor library complexity
  • 202control low read depth
  • 197severe bottlenecking
  • 120insufficient spot score
  • 102partially characterized antibody
  • 82missing possible_controls
  • 66missing RNA fragment size
  • 47insufficient replicate concordance
  • 44missing documents
  • 20uncharacterized antibody
  • 17antibody not characterized to standard
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 12low read length
  • 10mild to moderate bottlenecking
  • 7moderate library complexity
  • 4missing external identifiers
  • 4missing genotype
  • 2low read depth
BIOSAMPLE
ASSAY

82 results

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siRNA RNA-seq
ChIP-seq
CAGE
RIP-seq
immortalized cell line
S2-DRSC57
GM128662
GM128671
GM128681
GM128691
primary cell
cortex derived neurospheres3
tissue
head1
ovary1
testis1
whole organisms
carcass2
stem cell
H1-hESC1
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