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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
siRNA RNA-seq
15
ChIP-seq
9
CAGE
1
RIP-seq
Assay category
66
Transcription
15
DNA binding
1
RNA binding
Target of assay
68
RNA binding protein
11
transcription factor
4
histone
4
histone modification
3
narrow histone mark
1
broad histone mark
1
tag
Date released
63
March, 2014
6
January, 2012
6
March, 2011
3
December, 2011
3
July, 2013
1
April, 2012
Available data
79
fastq
57
sam
57
wig
17
bam
16
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
4
bed bedRnaElements
4
bigBed bedRnaElements
4
gtf
3
sra
1
bed bedGraph
Organism
59
Drosophila melanogaster
19
Homo sapiens
4
Drosophila pseudoobscura
Biosample type
73
immortalized cell line
3
primary cell
3
tissue
2
whole organisms
1
stem cell
Organ
2
gonad
1
ovary
1
testis
Project
63
modENCODE
16
ENCODE
3
Roadmap
Audit category:
1
extremely low read depth
0
missing possible_controls
Audit category:
1415
insufficient read depth
838
control insufficient read depth
579
missing controlled_by
476
insufficient read length
310
unreplicated experiment
209
poor library complexity
202
control low read depth
197
severe bottlenecking
120
insufficient spot score
102
partially characterized antibody
82
missing possible_controls
66
missing RNA fragment size
47
insufficient replicate concordance
44
missing documents
20
uncharacterized antibody
17
antibody not characterized to standard
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
12
low read length
10
mild to moderate bottlenecking
7
moderate library complexity
4
missing external identifiers
4
missing genotype
2
low read depth
BIOSAMPLE
ASSAY
82 results
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siRNA RNA-seq
ChIP-seq
CAGE
RIP-seq
immortalized cell line
S2-DRSC
57
GM12866
2
GM12867
1
GM12868
1
GM12869
1
+ See 11 more…
primary cell
cortex derived neurospheres
3
tissue
head
1
ovary
1
testis
1
whole organisms
carcass
2
stem cell
H1-hESC
1
See all biosamples
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