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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 2ChIP-seq
Assay category
  • 2DNA binding
Target of assay
  • 2transcription factor
  • 1RNA binding protein
Date released
  • 2April, 2017
Available data
  • 2bam
  • 2bed narrowPeak
  • 2bigBed narrowPeak
  • 2bigWig
  • 2fastq
Organism
  • 2Homo sapiens
Biosample type
  • 2tissue
Organ
  • 2liver
Project
  • 2ENCODE
Genome assembly (visualization)
  • 2GRCh38
  • 2hg19
Audit category:
  • 1415insufficient read depth
  • 838control insufficient read depth
  • 579missing controlled_by
  • 476insufficient read length
  • 310unreplicated experiment
  • 209poor library complexity
  • 202control low read depth
  • 197severe bottlenecking
  • 120insufficient spot score
  • 102partially characterized antibody
  • 82missing possible_controls
  • 66missing RNA fragment size
  • 47insufficient replicate concordance
  • 44missing documents
  • 20uncharacterized antibody
  • 17antibody not characterized to standard
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 2inconsistent target of control experiment
  • 2low read length
  • 1antibody characterized with exemption
  • 1low read depth
BIOSAMPLE
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ChIP-seq
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