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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 13total RNA-seq
  • 12polyA mRNA RNA-seq
  • 2MRE-seq
  • 2MeDIP-seq
Assay category
  • 25Transcription
  • 15DNA binding
  • 4DNA methylation
  • 2DNA sequencing
Target of assay
  • 13control
  • 2RNA binding protein
  • 2nucleotide modification
  • 2transcription factor
Date released
  • 20April, 2016
  • 13July, 2013
  • 4June, 2014
  • 4May, 2014
  • 2October, 2016
  • 1October, 2015
Available data
  • 31bam
  • 27fastq
  • 25bigWig
  • 25tsv
  • 13sra
Organism
  • 40Homo sapiens
  • 4Mus musculus
Biosample type
  • 31immortalized cell line
  • 12tissue
  • 1primary cell
Organ
  • 6embryonic structure
  • 6extraembryonic component
  • 1blood
  • 1brain
  • 1placenta
Project
  • 31ENCODE
  • 13Roadmap
Genome assembly (visualization)
  • 25GRCh38
  • 25hg19
Audit category:
  • 1415insufficient read depth
  • 838control insufficient read depth
  • 579missing controlled_by
  • 476insufficient read length
  • 310unreplicated experiment
  • 209poor library complexity
  • 202control low read depth
  • 197severe bottlenecking
  • 120insufficient spot score
  • 102partially characterized antibody
  • 82missing possible_controls
  • 66missing RNA fragment size
  • 47insufficient replicate concordance
  • 44missing documents
  • 20uncharacterized antibody
  • 17antibody not characterized to standard
  • 10missing spikeins
  • 2insufficient coverage
  • 2missing input control
Audit category:
  • 10low read depth
  • 10missing spikeins
  • 2low read length
  • 2mild to moderate bottlenecking
  • 1low replicate concordance
  • 1moderate library complexity
BIOSAMPLE
ASSAY

44 results

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ChIP-seq
total RNA-seq
polyA mRNA RNA-seq
MRE-seq
MeDIP-seq
immortalized cell line
HepG2266
K56265
CH12.LX11
MCF-711
MEL cell line11
tissue
chorionic villus4
placental basal plate2
trophoblast2
cerebellum1
chorion1
primary cell
peripheral blood mononuclear cell1
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