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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
13
total RNA-seq
12
polyA mRNA RNA-seq
2
MRE-seq
2
MeDIP-seq
Assay category
25
Transcription
15
DNA binding
4
DNA methylation
2
DNA sequencing
Target of assay
13
control
2
RNA binding protein
2
nucleotide modification
2
transcription factor
Date released
20
April, 2016
13
July, 2013
4
June, 2014
4
May, 2014
2
October, 2016
1
October, 2015
Available data
31
bam
27
fastq
25
bigWig
25
tsv
13
sra
Organism
40
Homo sapiens
4
Mus musculus
Biosample type
31
immortalized cell line
12
tissue
1
primary cell
Organ
6
embryonic structure
6
extraembryonic component
1
blood
1
brain
1
placenta
Project
31
ENCODE
13
Roadmap
Genome assembly (visualization)
25
GRCh38
25
hg19
Audit category:
1415
insufficient read depth
838
control insufficient read depth
579
missing controlled_by
476
insufficient read length
310
unreplicated experiment
209
poor library complexity
202
control low read depth
197
severe bottlenecking
120
insufficient spot score
102
partially characterized antibody
82
missing possible_controls
66
missing RNA fragment size
47
insufficient replicate concordance
44
missing documents
20
uncharacterized antibody
17
antibody not characterized to standard
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
10
low read depth
10
missing spikeins
2
low read length
2
mild to moderate bottlenecking
1
low replicate concordance
1
moderate library complexity
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
polyA mRNA RNA-seq
MRE-seq
MeDIP-seq
immortalized cell line
HepG2
2
6
6
K562
6
5
CH12.LX
1
1
MCF-7
1
1
MEL cell line
1
1
tissue
chorionic villus
4
placental basal plate
2
trophoblast
2
cerebellum
1
chorion
1
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primary cell
peripheral blood mononuclear cell
1
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