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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
4
RIP-seq
Assay category
13
DNA binding
4
RNA binding
Target of assay
14
transcription factor
8
RNA binding protein
8
chromatin remodeller
Date released
6
July, 2014
4
May, 2016
3
November, 2016
2
January, 2017
1
December, 2016
1
June, 2016
Available data
16
fastq
11
bam
7
bed narrowPeak
7
bigBed narrowPeak
7
bigWig
4
tsv
Organism
17
Homo sapiens
Biosample type
14
immortalized cell line
2
stem cell
1
tissue
Organ
1
liver
Project
17
ENCODE
Genome assembly (visualization)
7
GRCh38
7
hg19
Audit category:
1415
insufficient read depth
838
control insufficient read depth
579
missing controlled_by
476
insufficient read length
310
unreplicated experiment
209
poor library complexity
202
control low read depth
197
severe bottlenecking
120
insufficient spot score
102
partially characterized antibody
82
missing possible_controls
66
missing RNA fragment size
47
insufficient replicate concordance
44
missing documents
20
uncharacterized antibody
17
antibody not characterized to standard
10
missing spikeins
2
insufficient coverage
2
missing input control
Audit category:
10
low read depth
7
mild to moderate bottlenecking
6
borderline replicate concordance
6
low read length
3
moderate library complexity
2
inconsistent control read length
1
control low read depth
1
inconsistent platforms
1
mixed read lengths
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
RIP-seq
immortalized cell line
K562
3
4
GM12878
3
HepG2
3
A549
1
stem cell
H1-hESC
2
tissue
liver
1
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