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Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
26
Repli-chip
8
Assay category
DNA binding
26
Replication timing
8
Target of assay
transcription factor
16
histone
6
control
4
broad histone mark
3
chromatin remodeller
2
narrow histone mark
2
other context
1
other post-translational modification
1
Date released
November, 2011
25
July, 2012
8
May, 2012
1
Available data
bigWig
34
bam
26
fastq
26
bed narrowPeak
22
bigBed narrowPeak
22
tar
8
Experiment status
released
34
Organism
Mus musculus
34
Biosample type
in vitro differentiated cells
34
Organ
musculature of body
26
embryo
4
Cell
stem cell
3
neural cell
1
Project
ENCODE
34
Genome assembly
hg19
431
GRCh38
402
mm10
36
mm9
34
Lab
Barbara Wold, Caltech
26
David Gilbert, FSU
8
Audit category:
insufficient read length
13
insufficient read depth
10
control insufficient read depth
7
poor library complexity
2
severe bottlenecking
2
Audit category:
control low read depth
14
low read depth
14
mild to moderate bottlenecking
12
moderate library complexity
7
low read length
1
BIOSAMPLE
ASSAY
34 results
Clear Filters
ChIP-seq
Repli-chip
in vitro differentiated cells
myocyte
26
epiblast cell
2
ectodermal cell
1
endodermal cell
1
mesodermal cell
1
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