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Citing ENCODE
Experiment matrix
Enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
Assay category
DNA binding
32
Target of assay
transcription factor
17
histone
15
broad histone mark
9
narrow histone mark
6
chromatin remodeller
3
RNA binding protein
1
Date released
March, 2012
8
August, 2012
6
April, 2012
4
July, 2011
4
September, 2012
4
June, 2011
2
March, 2014
2
February, 2014
1
November, 2011
1
Available data
bam
32
bigWig
32
fastq
32
bed broadPeak
31
bigBed broadPeak
31
bed narrowPeak
22
bigBed narrowPeak
22
Experiment status
released
32
Organism
Mus musculus
32
Biosample type
tissue
21
cell line
11
Organ
spleen
7
blood
6
bodily fluid
6
embryo
4
heart
4
brain
2
intestine
2
small intestine
2
adipose tissue
1
connective tissue
1
gonad
1
kidney
1
limb
1
liver
1
musculature of body
1
testis
1
thymus
1
Cell
stem cell
10
Project
ENCODE
32
Genome assembly
hg19
600
GRCh38
542
mm10
254
mm9
32
ce10
4
ce11
4
dm3
4
dm6
4
Lab
Bing Ren, UCSD
22
Ross Hardison, PennState
9
Barbara Wold, Caltech
1
Audit category:
extremely low read depth
6
Audit category:
insufficient read depth
18
insufficient read length
11
control insufficient read depth
10
missing controlled_by
8
poor library complexity
2
severe bottlenecking
2
insufficient replicate concordance
1
Audit category:
low read length
267
low read depth
170
mild to moderate bottlenecking
169
inconsistent platforms
105
inconsistent target of control experiment
80
control low read depth
77
moderate library complexity
76
inconsistent control read length
32
borderline replicate concordance
21
mixed read lengths
21
BIOSAMPLE
ASSAY
32 results
Clear Filters
ChIP-seq
tissue
spleen
7
heart
4
brain
2
small intestine
2
brown adipose tissue
1
+ See 5 more…
cell line
G1E-ER4
6
E14TG2a.4
3
C2C12
1
ES-Bruce4
1
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