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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIA-PET
    7
Assay category
  • 3D chromatin structure
    7
Target of assay
  • histone
    4
  • narrow histone mark
    3
  • transcription factor
    3
  • broad histone mark
    1
Date released
  • July, 2014
    7
Available data
  • fastq
    13006
  • bam
    12177
  • bigWig
    11072
  • bigBed narrowPeak
    6662
  • bed narrowPeak
    6658
  • tsv
    2339
  • bed broadPeak
    1621
  • tagAlign
    1209
  • bigBed broadPeak
    1167
  • tar
    569
  • sra
    496
  • bed bedRnaElements
    288
  • bigBed bedRnaElements
    288
  • bed bedMethyl
    277
  • bigBed bedMethyl
    277
  • idat
    275
  • gtf
    269
  • bed tss_peak
    235
  • bigBed tss_peak
    235
  • gff gff3
    235
  • bed idr_peak
    134
  • bigBed idr_peak
    134
  • bed bed6+
    115
  • bigBed bed6+
    115
  • rcc
    115
  • bed bed3+
    91
  • bed bedLogR
    64
  • bigBed bedLogR
    63
  • sam
    59
  • wig
    59
  • bed bed12
    43
  • bigBed bed12
    43
  • bed bedGraph
    30
  • bed bedExonScore
    27
  • bigBed bedExonScore
    27
  • csfasta
    24
  • hdf5
    20
  • bed bed9
    18
  • bigBed bed9
    18
  • hic
    16
  • bigBed bed3+
    13
  • csqual
    12
  • vcf
    12
  • bed peptideMapping
    8
  • bigBed peptideMapping
    8
  • bed bed3
    7
  • bigBed bed3
    7
  • bed modPepMap
    6
  • bed pepMap
    6
  • bigBed modPepMap
    6
  • bigBed pepMap
    6
  • bedpe
    5
  • CEL
    4
  • fasta
    3
Experiment status
  • released
    7
Organism
  • Homo sapiens
    7
Biosample type
  • cell line
    7
Organ
  • blood
    7
  • bodily fluid
    7
Cell
  • cancer cell
    6
  • lymphoblast
    1
Project
  • ENCODE
    7
Lab
  • Michael Snyder, Stanford
    7
Audit category:
  • missing analysis_step_run
    7
  • antibody characterized with exemption
    5
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

7 results

Clear Filters
ChIA-PET
cell line
K5626
GM128781
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