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Experiment matrix

Enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
    8699
  • DNase-seq
  • polyA RNA-seq
    770
  • shRNA RNA-seq
    523
  • total RNA-seq
    486
  • eCLIP
    459
  • DNAme array
    257
  • small RNA-seq
    214
  • WGBS
    201
  • microRNA-seq
    184
  • ATAC-seq
    180
  • RNA microarray
    170
  • RAMPAGE
    168
  • RNA Bind-n-Seq
    158
  • genotyping array
    123
  • CAGE
    120
  • microRNA counts
    115
  • siRNA RNA-seq
    113
  • Repli-seq
    104
  • RRBS
    103
  • CRISPRi RNA-seq
    77
  • Repli-chip
    63
  • ChIA-PET
    57
  • Hi-C
    56
  • CRISPR RNA-seq
    50
  • PAS-seq
    47
  • genetic modification DNase-seq
    46
  • RIP-seq
    45
  • FAIRE-seq
    37
  • RIP-chip
    32
  • polyA depleted RNA-seq
    32
  • RNA-PET
    31
  • single cell RNA-seq
    30
  • MS-MS
    14
  • 5C
    13
  • genotyping HTS
    13
  • DNA-PET
    6
  • MRE-seq
    4
  • MeDIP-seq
    4
  • iCLIP
    3
  • whole genome sequencing assay
    3
  • 5' RLM RACE
    2
  • MNase-seq
    2
  • Switchgear
    2
  • Circulome-seq
    1
Assay category
  • DNA accessibility
    2
Date released
  • July, 2011
    2
Available data
  • bam
    2
  • bigWig
    2
  • csfasta
    2
  • csqual
    2
Experiment status
  • released
    2
Organism
  • Homo sapiens
    2
Biosample type
  • cell line
    2
Organ
  • blood
    2
  • bodily fluid
    2
Cell
  • cancer cell
    1
  • lymphoblast
    1
Project
  • ENCODE
    2
Genome assembly
  • hg19
    2
Lab
  • Michael Snyder, Stanford
    2
assay_title!
  • DNase-seq
BIOSAMPLE
ASSAY

2 results

Clear Filters
MNase-seq
cell line
GM128781
K5621
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