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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
2
DNAme array
2
microRNA counts
2
microRNA-seq
1
RAMPAGE
1
small RNA-seq
1
total RNA-seq
Assay category
16
DNA binding
7
Transcription
2
DNA methylation
Target of assay
7
control
6
transcription factor
3
histone
3
histone modification
2
RNA binding protein
2
narrow histone mark
1
broad histone mark
Date released
9
January, 2017
4
February, 2017
4
June, 2017
3
November, 2016
2
August, 2016
1
July, 2016
1
March, 2017
1
May, 2016
Available data
21
bam
21
fastq
10
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
5
tsv
2
bed bed6+
2
bigBed bed6+
2
idat
2
rcc
1
bed tss_peak
1
bigBed tss_peak
1
gff gff3
Organism
25
Homo sapiens
Biosample type
25
tissue
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
25
ENCODE
Genome assembly (visualization)
12
GRCh38
8
hg19
Audit category:
1
insufficient read depth
Audit category:
9
mild to moderate bottlenecking
7
moderate library complexity
6
antibody characterized with exemption
1
low read depth
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
DNAme array
microRNA counts
microRNA-seq
RAMPAGE
small RNA-seq
total RNA-seq
tissue
vagina
16
2
2
2
1
1
1
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