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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
6
total RNA-seq
4
RAMPAGE
2
DNAme array
2
DNase-seq
2
microRNA counts
2
microRNA-seq
2
small RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
16
Transcription
8
DNA binding
3
DNA accessibility
3
DNA methylation
1
DNA sequencing
Target of assay
4
transcription factor
3
control
2
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
7
November, 2016
4
June, 2014
3
August, 2016
3
July, 2016
3
May, 2016
2
August, 2015
2
June, 2017
2
May, 2015
1
December, 2016
1
January, 2017
1
September, 2011
1
September, 2012
Available data
25
bam
24
fastq
18
bigWig
14
tsv
4
bed narrowPeak
4
bed tss_peak
4
bigBed narrowPeak
4
bigBed tss_peak
4
gff gff3
3
bed idr_peak
3
bigBed idr_peak
2
bed bed6+
2
bigBed bed6+
2
idat
2
rcc
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
30
Homo sapiens
Biosample type
25
tissue
5
primary cell
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
30
ENCODE
Genome assembly (visualization)
18
GRCh38
17
hg19
Audit category:
1
extremely low spot score
Audit category:
5
mild to moderate bottlenecking
4
antibody characterized with exemption
2
moderate library complexity
1
low replicate concordance
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
total RNA-seq
RAMPAGE
DNAme array
DNase-seq
microRNA counts
microRNA-seq
small RNA-seq
FAIRE-seq
RRBS
tissue
uterus
8
3
2
2
2
2
2
2
1
endometrium
1
primary cell
endometrial microvascular endothelial cells
1
1
myometrial cell
1
1
uterine smooth muscle cell
1
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