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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
7
polyA mRNA RNA-seq
3
DNase-seq
3
total RNA-seq
2
CAGE
2
DNAme array
2
PAS-seq
2
RAMPAGE
2
microRNA counts
2
microRNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
Assay category
22
Transcription
15
DNA binding
4
DNA accessibility
3
DNA methylation
1
DNA sequencing
Target of assay
6
transcription factor
5
histone
5
histone modification
4
control
3
broad histone mark
2
RNA binding protein
2
narrow histone mark
1
chromatin remodeller
Date released
7
March, 2014
4
August, 2016
4
July, 2016
4
June, 2017
4
March, 2012
3
January, 2017
3
July, 2013
3
May, 2016
2
April, 2012
2
December, 2014
2
December, 2016
2
September, 2012
1
February, 2012
1
February, 2017
1
May, 2012
1
September, 2011
Available data
40
fastq
33
bam
25
bigWig
13
tsv
12
bed narrowPeak
12
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
2
bed bed6+
2
bed tss_peak
2
bigBed bed6+
2
bigBed tss_peak
2
gff gff3
2
idat
2
rcc
1
bed bedMethyl
1
bed bedRnaElements
1
bigBed bedMethyl
1
bigBed bedRnaElements
Organism
26
Homo sapiens
11
Mus musculus
6
Drosophila melanogaster
1
Drosophila pseudoobscura
Biosample type
44
tissue
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
34
ENCODE
7
modENCODE
3
Roadmap
Genome assembly (visualization)
17
GRCh38
13
hg19
10
mm10
8
mm9
1
dm3
Audit category:
5
control extremely low read depth
2
extremely low spot score
Audit category:
8
insufficient read depth
4
control low read depth
3
control insufficient read depth
2
insufficient read length
2
missing controlled_by
1
insufficient replicate concordance
1
insufficient spot score
1
missing possible_controls
Audit category:
9
mild to moderate bottlenecking
8
low read length
6
moderate library complexity
5
low read depth
4
antibody characterized with exemption
4
inconsistent platforms
2
insufficient read depth
1
inconsistent control read length
1
low replicate concordance
1
missing external identifiers
1
missing genotype
1
missing spikeins
1
mixed read lengths
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
polyA mRNA RNA-seq
DNase-seq
total RNA-seq
CAGE
DNAme array
PAS-seq
RAMPAGE
microRNA counts
microRNA-seq
small RNA-seq
ATAC-seq
RRBS
tissue
testis
15
7
3
3
2
2
2
2
2
2
2
1
1
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