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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
8
DNase-seq
3
polyA mRNA RNA-seq
1
RAMPAGE
1
RNA microarray
1
WGBS
1
small RNA-seq
1
total RNA-seq
Assay category
10
DNA binding
8
DNA accessibility
7
Transcription
1
DNA methylation
1
DNA sequencing
Target of assay
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
17
July, 2013
3
June, 2014
1
April, 2011
1
August, 2015
1
February, 2011
1
January, 2012
1
March, 2011
1
May, 2011
Available data
23
bam
23
fastq
17
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
6
tsv
1
bed idr_peak
1
bed tss_peak
1
bigBed idr_peak
1
bigBed tss_peak
1
gff gff3
Organism
26
Homo sapiens
Biosample type
21
tissue
5
primary cell
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
17
Roadmap
9
ENCODE
Genome assembly (visualization)
21
hg19
20
GRCh38
Audit category:
4
extremely low spot score
Audit category:
4
control insufficient read depth
4
insufficient read depth
2
insufficient read length
1
insufficient spot score
Audit category:
10
low read length
5
low read depth
4
insufficient read depth
2
control low read depth
2
mild to moderate bottlenecking
1
inconsistent platforms
1
low replicate concordance
1
moderate library complexity
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ChIP-seq
DNase-seq
polyA mRNA RNA-seq
RAMPAGE
RNA microarray
WGBS
small RNA-seq
total RNA-seq
tissue
spinal cord
7
7
3
1
1
1
1
primary cell
astrocyte of the spinal cord
3
1
1
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