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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
4
DNAme array
3
RNA microarray
3
small RNA-seq
2
DNase-seq
2
RAMPAGE
2
microRNA counts
2
microRNA-seq
2
total RNA-seq
1
ATAC-seq
1
CAGE
1
RNA-PET
1
RRBS
1
genotyping array
Assay category
16
Transcription
14
DNA binding
5
DNA methylation
3
DNA accessibility
1
DNA sequencing
1
Genotyping
Target of assay
7
control
6
transcription factor
3
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
5
August, 2016
5
June, 2017
5
November, 2016
3
February, 2017
3
May, 2016
3
October, 2011
2
January, 2017
2
July, 2009
2
July, 2016
2
March, 2017
1
April, 2017
1
August, 2011
1
December, 2011
1
January, 2012
1
March, 2011
1
November, 2010
1
September, 2011
Available data
27
bam
27
fastq
16
bigWig
8
tsv
6
bed narrowPeak
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
idat
2
bed bed6+
2
bed tss_peak
2
bigBed bed6+
2
bigBed tss_peak
2
gff gff3
2
rcc
1
bed bed12
1
bed bedLogR
1
bed bedMethyl
1
bigBed bed12
1
bigBed bedLogR
1
bigBed bedMethyl
1
csfasta
1
csqual
Organism
39
Homo sapiens
Biosample type
31
tissue
8
primary cell
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
39
ENCODE
Genome assembly (visualization)
18
hg19
15
GRCh38
Audit category:
1
extremely low spot score
Audit category:
1
insufficient spot score
1
missing possible_controls
Audit category:
11
mild to moderate bottlenecking
6
antibody characterized with exemption
5
moderate library complexity
1
insufficient read depth
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
DNAme array
RNA microarray
small RNA-seq
DNase-seq
RAMPAGE
microRNA counts
microRNA-seq
total RNA-seq
ATAC-seq
CAGE
RNA-PET
RRBS
genotyping array
tissue
prostate gland
11
3
2
3
1
2
2
2
2
1
1
1
primary cell
epithelial cell of prostate
3
1
1
1
1
1
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