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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 10DNase-seq
  • 3microRNA-seq
  • 3polyA mRNA RNA-seq
  • 2CAGE
  • 2WGBS
  • 2small RNA-seq
  • 2total RNA-seq
  • 1DNAme array
  • 1RNA microarray
  • 1RRBS
  • 1genotyping HTS
Assay category
  • 15DNA binding
  • 13Transcription
  • 10DNA accessibility
  • 4DNA methylation
  • 3DNA sequencing
  • 1Genotyping
Target of assay
  • 10histone
  • 10histone modification
  • 5broad histone mark
  • 5narrow histone mark
  • 4control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 22July, 2013
  • 4March, 2012
  • 3May, 2012
  • 2February, 2011
  • 2July, 2012
  • 2June, 2012
  • 2May, 2016
  • 1April, 2011
  • 1December, 2010
  • 1January, 2012
  • 1October, 2011
  • 1September, 2011
  • 1September, 2012
Available data
  • 33fastq
  • 31bam
  • 25bigWig
  • 20bed broadPeak
  • 19bed narrowPeak
  • 19bigBed narrowPeak
  • 14bigBed broadPeak
  • 11tagAlign
  • 9tsv
  • 7bed bedRnaElements
  • 7bigBed bedRnaElements
  • 5gtf
  • 2bed idr_peak
  • 2bed tss_peak
  • 2bigBed idr_peak
  • 2bigBed tss_peak
  • 2gff gff3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1sra
Organism
  • 37Homo sapiens
  • 6Mus musculus
Biosample type
  • 32tissue
  • 11primary cell
Organ
  • 661brain
  • 543connective tissue
  • 447intestine
  • 387skin of body
  • 376muscle organ
  • 298heart
  • 292lung
  • 289embryonic structure
  • 281liver
  • 255kidney
  • 253large intestine
  • 241stomach
  • 197blood vessel
  • 153extraembryonic component
  • 147penis
  • 135adipose tissue
  • 120mammary gland
  • 109esophagus
  • 107small intestine
  • 104pancreas
  • 101adrenal gland
  • 95gonad
  • 93spleen
  • 69vein
  • 54thyroid gland
  • 53thymus
  • 48ovary
  • 44breast
  • 44testis
  • 43placenta
  • 39prostate gland
  • 37blood
  • 36artery
  • 34bone element
  • 31eye
  • 31ureter
  • 30uterus
  • 26spinal cord
  • 25vagina
  • 24mouth
  • 21urinary bladder
  • 20bronchus
  • 6lymphatic vessel
  • 5tongue
  • 3trachea
  • 2skeleton
  • 1nose
Project
  • 22Roadmap
  • 21ENCODE
Genome assembly (visualization)
  • 24hg19
  • 22GRCh38
  • 5mm10
  • 4mm9
Audit category:
  • 3control extremely low read depth
  • 3extremely low spot score
Audit category:
  • 9insufficient read depth
  • 5control insufficient read depth
  • 3missing RNA fragment size
  • 2insufficient spot score
  • 1insufficient read length
  • 1missing documents
  • 1poor library complexity
  • 1unreplicated experiment
Audit category:
  • 14low read length
  • 6low read depth
  • 4control low read depth
  • 4insufficient read depth
  • 4mild to moderate bottlenecking
  • 2inconsistent control read length
  • 1inconsistent platforms
  • 1low replicate concordance
  • 1low spot score
  • 1missing spikeins
  • 1moderate library complexity
BIOSAMPLE
ASSAY

43 results

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Clear Filters
ChIP-seq
DNase-seq
microRNA-seq
polyA mRNA RNA-seq
CAGE
WGBS
small RNA-seq
total RNA-seq
DNAme array
RNA microarray
RRBS
genotyping HTS
tissue
placenta129332111
primary cell
fibroblast of villous mesenchyme311111
placental epithelial cell111
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