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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
DNase-seq
4
DNAme array
4
genotyping array
3
ChIP-seq
3
RNA microarray
2
RRBS
1
RAMPAGE
1
total RNA-seq
Assay category
13
DNA accessibility
6
DNA methylation
5
Transcription
4
Genotyping
3
DNA binding
2
DNA sequencing
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
3
April, 2011
3
December, 2010
3
May, 2016
2
August, 2011
2
August, 2015
2
August, 2016
2
December, 2011
2
June, 2017
2
March, 2011
2
September, 2012
2
September, 2015
1
February, 2011
1
June, 2014
1
May, 2011
1
November, 2012
1
September, 2011
1
September, 2014
Available data
20
fastq
18
bam
18
bigWig
16
bed broadPeak
16
bigBed broadPeak
15
bed narrowPeak
15
bigBed narrowPeak
5
idat
2
bed bedLogR
2
bed bedMethyl
2
bigBed bedLogR
2
bigBed bedMethyl
2
tsv
1
bed tss_peak
1
bigBed tss_peak
1
gff gff3
Organism
26
Homo sapiens
5
Mus musculus
Biosample type
20
primary cell
11
tissue
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
31
ENCODE
Genome assembly (visualization)
18
hg19
9
GRCh38
4
mm10
Audit category:
1
extremely low spot score
Audit category:
7
unreplicated experiment
Audit category:
4
insufficient read depth
4
mixed run types
3
low read depth
3
low read length
3
low spot score
2
control low read depth
1
inconsistent platforms
1
mild to moderate bottlenecking
1
moderate library complexity
BIOSAMPLE
ASSAY
31 results
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DNase-seq
DNAme array
genotyping array
ChIP-seq
RNA microarray
RRBS
RAMPAGE
total RNA-seq
primary cell
retinal pigment epithelial cell
1
2
2
3
1
1
iris pigment epithelial cell
1
2
2
1
1
fibroblast of the conjunctiva
1
1
Muller cell
1
tissue
retina
7
camera-type eye
1
1
eye
2
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