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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 13DNase-seq
  • 4DNAme array
  • 4genotyping array
  • 3ChIP-seq
  • 3RNA microarray
  • 2RRBS
  • 1RAMPAGE
  • 1total RNA-seq
Assay category
  • 13DNA accessibility
  • 6DNA methylation
  • 5Transcription
  • 4Genotyping
  • 3DNA binding
  • 2DNA sequencing
Target of assay
  • 1RNA binding protein
  • 1control
  • 1histone
  • 1histone modification
  • 1narrow histone mark
  • 1transcription factor
Date released
  • 3April, 2011
  • 3December, 2010
  • 3May, 2016
  • 2August, 2011
  • 2August, 2015
  • 2August, 2016
  • 2December, 2011
  • 2June, 2017
  • 2March, 2011
  • 2September, 2012
  • 2September, 2015
  • 1February, 2011
  • 1June, 2014
  • 1May, 2011
  • 1November, 2012
  • 1September, 2011
  • 1September, 2014
Available data
  • 20fastq
  • 18bam
  • 18bigWig
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 15bed narrowPeak
  • 15bigBed narrowPeak
  • 5idat
  • 2bed bedLogR
  • 2bed bedMethyl
  • 2bigBed bedLogR
  • 2bigBed bedMethyl
  • 2tsv
  • 1bed tss_peak
  • 1bigBed tss_peak
  • 1gff gff3
Organism
  • 26Homo sapiens
  • 5Mus musculus
Biosample type
  • 20primary cell
  • 11tissue
Organ
  • 661brain
  • 543connective tissue
  • 447intestine
  • 387skin of body
  • 376muscle organ
  • 298heart
  • 292lung
  • 289embryonic structure
  • 281liver
  • 255kidney
  • 253large intestine
  • 241stomach
  • 197blood vessel
  • 153extraembryonic component
  • 147penis
  • 135adipose tissue
  • 120mammary gland
  • 109esophagus
  • 107small intestine
  • 104pancreas
  • 101adrenal gland
  • 95gonad
  • 93spleen
  • 69vein
  • 54thyroid gland
  • 53thymus
  • 48ovary
  • 44breast
  • 44testis
  • 43placenta
  • 39prostate gland
  • 37blood
  • 36artery
  • 34bone element
  • 31eye
  • 31ureter
  • 30uterus
  • 26spinal cord
  • 25vagina
  • 24mouth
  • 21urinary bladder
  • 20bronchus
  • 6lymphatic vessel
  • 5tongue
  • 3trachea
  • 2skeleton
  • 1nose
Project
  • 31ENCODE
Genome assembly (visualization)
  • 18hg19
  • 9GRCh38
  • 4mm10
Audit category:
  • 1extremely low spot score
Audit category:
  • 7unreplicated experiment
Audit category:
  • 4insufficient read depth
  • 4mixed run types
  • 3low read depth
  • 3low read length
  • 3low spot score
  • 2control low read depth
  • 1inconsistent platforms
  • 1mild to moderate bottlenecking
  • 1moderate library complexity
BIOSAMPLE
ASSAY

31 results

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Clear Filters
DNase-seq
DNAme array
genotyping array
ChIP-seq
RNA microarray
RRBS
RAMPAGE
total RNA-seq
primary cell
retinal pigment epithelial cell122311
iris pigment epithelial cell12211
fibroblast of the conjunctiva11
Muller cell1
tissue
retina7
camera-type eye11
eye2
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