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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21ChIP-seq
  • 5total RNA-seq
  • 3polyA mRNA RNA-seq
  • 2ATAC-seq
  • 1CAGE
  • 1DNase-seq
  • 1small RNA-seq
Assay category
  • 21DNA binding
  • 10Transcription
  • 3DNA accessibility
Target of assay
  • 11histone
  • 11histone modification
  • 7transcription factor
  • 6broad histone mark
  • 5narrow histone mark
  • 3control
  • 2chromatin remodeller
Date released
  • 8April, 2012
  • 4March, 2012
  • 3August, 2012
  • 3July, 2011
  • 2February, 2012
  • 2January, 2017
  • 2July, 2012
  • 2June, 2011
  • 2March, 2016
  • 2May, 2012
  • 1August, 2011
  • 1June, 2012
  • 1October, 2015
  • 1September, 2014
Available data
  • 34bam
  • 34bigWig
  • 34fastq
  • 19bed broadPeak
  • 19bed narrowPeak
  • 19bigBed broadPeak
  • 19bigBed narrowPeak
  • 10tsv
  • 3bed bedRnaElements
  • 3bigBed bedRnaElements
  • 2bigBed bed3+
  • 2gtf
  • 1bed idr_peak
  • 1bed tss_peak
  • 1bigBed idr_peak
  • 1bigBed tss_peak
  • 1gff gff3
Organism
  • 30Mus musculus
  • 4Homo sapiens
Biosample type
  • 24primary cell
  • 7tissue
  • 3stem cell
Organ
  • 661brain
  • 543connective tissue
  • 447intestine
  • 387skin of body
  • 376muscle organ
  • 298heart
  • 292lung
  • 289embryonic structure
  • 281liver
  • 255kidney
  • 253large intestine
  • 241stomach
  • 197blood vessel
  • 153extraembryonic component
  • 147penis
  • 135adipose tissue
  • 120mammary gland
  • 109esophagus
  • 107small intestine
  • 104pancreas
  • 101adrenal gland
  • 95gonad
  • 93spleen
  • 69vein
  • 54thyroid gland
  • 53thymus
  • 48ovary
  • 44breast
  • 44testis
  • 43placenta
  • 39prostate gland
  • 37blood
  • 36artery
  • 34bone element
  • 31eye
  • 31ureter
  • 30uterus
  • 26spinal cord
  • 25vagina
  • 24mouth
  • 21urinary bladder
  • 20bronchus
  • 6lymphatic vessel
  • 5tongue
  • 3trachea
  • 2skeleton
  • 1nose
Project
  • 34ENCODE
Genome assembly (visualization)
  • 25mm10
  • 8mm9
  • 4GRCh38
  • 4hg19
Audit category:
  • 12insufficient read depth
  • 8control low read depth
  • 6control insufficient read depth
  • 2insufficient read length
  • 1poor library complexity
Audit category:
  • 17low read length
  • 14inconsistent control read length
  • 12inconsistent platforms
  • 9low read depth
  • 8control low read depth
  • 7mild to moderate bottlenecking
  • 6mixed read lengths
  • 3moderate library complexity
  • 2borderline replicate concordance
  • 2low replicate concordance
  • 2missing spikeins
  • 1insufficient read depth
BIOSAMPLE
ASSAY

34 results

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Clear Filters
ChIP-seq
total RNA-seq
polyA mRNA RNA-seq
ATAC-seq
CAGE
DNase-seq
small RNA-seq
primary cell
megakaryocyte9211
bone marrow macrophage61
granulocyte monocyte progenitor cell21
stromal cell of bone marrow1
tissue
bone marrow61
stem cell
mesenchymal stem cell of the bone marrow111
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