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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15ChIP-seq
  • 7total RNA-seq
  • 6DNAme array
  • 2ATAC-seq
  • 2DNase-seq
  • 2RNA microarray
  • 1CAGE
  • 1small RNA-seq
Assay category
  • 15DNA binding
  • 11Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 7histone
  • 7histone modification
  • 5control
  • 4broad histone mark
  • 3RNA binding protein
  • 3narrow histone mark
  • 3transcription factor
Date released
  • 8November, 2016
  • 7June, 2017
  • 6June, 2014
  • 2February, 2017
  • 2January, 2017
  • 2March, 2011
  • 1April, 2011
  • 1December, 2010
  • 1February, 2011
  • 1January, 2012
  • 1July, 2012
  • 1June, 2012
  • 1June, 2016
  • 1May, 2012
  • 1October, 2011
Available data
  • 28bam
  • 28fastq
  • 22bigWig
  • 12bed narrowPeak
  • 12bigBed narrowPeak
  • 9tsv
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 6idat
  • 3bed bedRnaElements
  • 3bigBed bedRnaElements
  • 2gtf
  • 1bed idr_peak
  • 1bed tss_peak
  • 1bigBed idr_peak
  • 1bigBed tss_peak
  • 1gff gff3
Organism
  • 36Homo sapiens
Biosample type
  • 20tissue
  • 16primary cell
Organ
  • 661brain
  • 543connective tissue
  • 447intestine
  • 387skin of body
  • 376muscle organ
  • 298heart
  • 292lung
  • 289embryonic structure
  • 281liver
  • 255kidney
  • 253large intestine
  • 241stomach
  • 197blood vessel
  • 153extraembryonic component
  • 147penis
  • 135adipose tissue
  • 120mammary gland
  • 109esophagus
  • 107small intestine
  • 104pancreas
  • 101adrenal gland
  • 95gonad
  • 93spleen
  • 69vein
  • 54thyroid gland
  • 53thymus
  • 48ovary
  • 44breast
  • 44testis
  • 43placenta
  • 39prostate gland
  • 37blood
  • 36artery
  • 34bone element
  • 31eye
  • 31ureter
  • 30uterus
  • 26spinal cord
  • 25vagina
  • 24mouth
  • 21urinary bladder
  • 20bronchus
  • 6lymphatic vessel
  • 5tongue
  • 3trachea
  • 2skeleton
  • 1nose
Project
  • 36ENCODE
Genome assembly (visualization)
  • 21GRCh38
  • 21hg19
Audit category:
  • 1extremely low spot score
Audit category:
  • 1missing controlled_by
  • 1severe bottlenecking
Audit category:
  • 7mild to moderate bottlenecking
  • 5moderate library complexity
  • 4low read depth
  • 3low read length
  • 2antibody characterized with exemption
  • 2control low read depth
  • 2insufficient read depth
  • 1inconsistent control read length
  • 1inconsistent platforms
  • 1low replicate concordance
BIOSAMPLE
ASSAY

36 results

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Clear Filters
ChIP-seq
total RNA-seq
DNAme array
ATAC-seq
DNase-seq
RNA microarray
CAGE
small RNA-seq
tissue
tibial artery741
coronary artery521
primary cell
fibroblast of pulmonary artery311
pulmonary artery endothelial cell111
thoracic aorta endothelial cell111
endothelial cell of coronary artery1
epithelial cell of umbilical artery1
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