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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
7
total RNA-seq
6
DNAme array
2
ATAC-seq
2
DNase-seq
2
RNA microarray
1
CAGE
1
small RNA-seq
Assay category
15
DNA binding
11
Transcription
6
DNA methylation
4
DNA accessibility
Target of assay
7
histone
7
histone modification
5
control
4
broad histone mark
3
RNA binding protein
3
narrow histone mark
3
transcription factor
Date released
8
November, 2016
7
June, 2017
6
June, 2014
2
February, 2017
2
January, 2017
2
March, 2011
1
April, 2011
1
December, 2010
1
February, 2011
1
January, 2012
1
July, 2012
1
June, 2012
1
June, 2016
1
May, 2012
1
October, 2011
Available data
28
bam
28
fastq
22
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
9
tsv
6
bed broadPeak
6
bigBed broadPeak
6
idat
3
bed bedRnaElements
3
bigBed bedRnaElements
2
gtf
1
bed idr_peak
1
bed tss_peak
1
bigBed idr_peak
1
bigBed tss_peak
1
gff gff3
Organism
36
Homo sapiens
Biosample type
20
tissue
16
primary cell
Organ
661
brain
543
connective tissue
447
intestine
387
skin of body
376
muscle organ
298
heart
292
lung
289
embryonic structure
281
liver
255
kidney
253
large intestine
241
stomach
197
blood vessel
153
extraembryonic component
147
penis
135
adipose tissue
120
mammary gland
109
esophagus
107
small intestine
104
pancreas
101
adrenal gland
95
gonad
93
spleen
69
vein
54
thyroid gland
53
thymus
48
ovary
44
breast
44
testis
43
placenta
39
prostate gland
37
blood
36
artery
34
bone element
31
eye
31
ureter
30
uterus
26
spinal cord
25
vagina
24
mouth
21
urinary bladder
20
bronchus
6
lymphatic vessel
5
tongue
3
trachea
2
skeleton
1
nose
Project
36
ENCODE
Genome assembly (visualization)
21
GRCh38
21
hg19
Audit category:
1
extremely low spot score
Audit category:
1
missing controlled_by
1
severe bottlenecking
Audit category:
7
mild to moderate bottlenecking
5
moderate library complexity
4
low read depth
3
low read length
2
antibody characterized with exemption
2
control low read depth
2
insufficient read depth
1
inconsistent control read length
1
inconsistent platforms
1
low replicate concordance
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
total RNA-seq
DNAme array
ATAC-seq
DNase-seq
RNA microarray
CAGE
small RNA-seq
tissue
tibial artery
7
4
1
coronary artery
5
2
1
primary cell
fibroblast of pulmonary artery
3
1
1
pulmonary artery endothelial cell
1
1
1
thoracic aorta endothelial cell
1
1
1
endothelial cell of coronary artery
1
epithelial cell of umbilical artery
1
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