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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 63Repli-chip
  • 13ChIP-seq
  • 13DNase-seq
  • 95C
  • 9FAIRE-seq
  • 3total RNA-seq
Assay category
  • 63Replication timing
  • 22DNA accessibility
  • 13DNA binding
  • 93D chromatin structure
  • 3Transcription
Target of assay
  • 13transcription factor
  • 5RNA binding protein
Date released
  • 36July, 2015
  • 21July, 2012
  • 21March, 2011
  • 11April, 2011
  • 9October, 2011
  • 6April, 2012
  • 3June, 2012
  • 2March, 2012
  • 1August, 2012
Available data
  • 11322fastq
  • 10052bam
  • 8882bigWig
  • 5733bed narrowPeak
  • 5391bigBed narrowPeak
  • 2248bed broadPeak
  • 2138tsv
  • 1777bigBed broadPeak
  • 1434tagAlign
  • 331sra
  • 288bed bedRnaElements
  • 288bigBed bedRnaElements
  • 277idat
  • 269gtf
  • 223bed tss_peak
  • 223bigBed tss_peak
  • 223gff gff3
  • 220bed bedMethyl
  • 220bigBed bedMethyl
  • 122bed idr_peak
  • 122bigBed idr_peak
  • 115bed bed6+
  • 115bigBed bed6+
  • 115rcc
  • 110tar
  • 64bed bedLogR
  • 63bigBed bedLogR
  • 59sam
  • 59wig
  • 43bed bed12
  • 43bigBed bed12
  • 30bed bedGraph
  • 27bed bedExonScore
  • 27bigBed bedExonScore
  • 25csfasta
  • 18bed bed9
  • 18bigBed bed9
  • 13csqual
  • 12bed bed3+
  • 12hdf5
  • 10bigBed bed3+
  • 9vcf
  • 8bed peptideMapping
  • 8bigBed peptideMapping
  • 7bed bed3
  • 7bigBed bed3
  • 6bed modPepMap
  • 6bed pepMap
  • 6bigBed modPepMap
  • 6bigBed pepMap
  • 5bedpe
  • 5hic
  • 4CEL
  • 3fasta
Organism
  • 89Homo sapiens
  • 21Mus musculus
Biosample type
  • 47immortalized cell line
  • 35in vitro differentiated cells
  • 14primary cell
  • 12stem cell
  • 2induced pluripotent stem cell line
Organ
  • 6embryonic structure
  • 6skin of body
  • 3blood vessel
  • 3connective tissue
  • 3liver
  • 3vein
  • 1mammary gland
  • 1penis
Project
  • 110ENCODE
Genome assembly (visualization)
  • 62hg19
  • 18mm9
  • 3mm10
Audit category:
  • 1extremely low spot score
Audit category:
  • 17unreplicated experiment
  • 13insufficient read length
  • 8insufficient read depth
  • 4control low read depth
  • 1insufficient spot score
  • 1poor library complexity
  • 1severe bottlenecking
Audit category:
  • 12inconsistent platforms
  • 4control low read depth
  • 4low read length
  • 4mild to moderate bottlenecking
  • 4mixed read lengths
  • 2inconsistent control read length
  • 2low read depth
  • 2moderate library complexity
  • 1low spot score
BIOSAMPLE
ASSAY

110 results

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Clear Filters
Repli-chip
ChIP-seq
DNase-seq
5C
FAIRE-seq
total RNA-seq
immortalized cell line
GM128783111
HeLa-S31311
HepG23111
K5623111
LNCaP clone FGC21
in vitro differentiated cells
hepatocyte3
neural progenitor cell3
splanchnic mesodermal cell3
endodermal cell2
epiblast cell2
primary cell
endothelial cell of umbilical vein111
myoblast3
keratinocyte11
IMR-901
T-cell1
stem cell
stem cell of epidermis2
46C1
BG011
BG02ES1
CyT491
induced pluripotent stem cell line
induced pluripotent stem cell2
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