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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
DNA-PET
3
CAGE
2
MNase-seq
2
polyA mRNA RNA-seq
Assay category
6
Genotyping
5
Transcription
2
DNA accessibility
Date released
6
January, 2011
3
March, 2011
2
July, 2011
2
November, 2010
Available data
11322
fastq
10052
bam
8882
bigWig
5733
bed narrowPeak
5391
bigBed narrowPeak
2248
bed broadPeak
2138
tsv
1777
bigBed broadPeak
1434
tagAlign
331
sra
288
bed bedRnaElements
288
bigBed bedRnaElements
277
idat
269
gtf
223
bed tss_peak
223
bigBed tss_peak
223
gff gff3
220
bed bedMethyl
220
bigBed bedMethyl
122
bed idr_peak
122
bigBed idr_peak
115
bed bed6+
115
bigBed bed6+
115
rcc
110
tar
64
bed bedLogR
63
bigBed bedLogR
59
sam
59
wig
43
bed bed12
43
bigBed bed12
30
bed bedGraph
27
bed bedExonScore
27
bigBed bedExonScore
25
csfasta
18
bed bed9
18
bigBed bed9
13
csqual
12
bed bed3+
12
hdf5
10
bigBed bed3+
9
vcf
8
bed peptideMapping
8
bigBed peptideMapping
7
bed bed3
7
bigBed bed3
6
bed modPepMap
6
bed pepMap
6
bigBed modPepMap
6
bigBed pepMap
5
bedpe
5
hic
4
CEL
3
fasta
Organism
13
Homo sapiens
Biosample type
12
immortalized cell line
1
tissue
Organ
1
prostate gland
Project
13
ENCODE
Genome assembly (visualization)
7
hg19
1
GRCh38
Audit category:
1
missing possible_controls
1
missing spikeins
Audit category:
2
inconsistent platforms
BIOSAMPLE
ASSAY
13 results
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Clear Filters
DNA-PET
CAGE
MNase-seq
polyA mRNA RNA-seq
immortalized cell line
K562
3
2
1
1
GM12878
3
1
1
tissue
prostate gland
1
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