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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 155RAMPAGE
  • 68CAGE
Assay category
  • 223Transcription
Date released
  • 60August, 2016
  • 32May, 2012
  • 22June, 2014
  • 21December, 2011
  • 19August, 2015
  • 16April, 2015
  • 16October, 2016
  • 15March, 2011
  • 11November, 2014
  • 4March, 2016
  • 4May, 2016
  • 3September, 2014
Available data
  • 11322fastq
  • 10052bam
  • 8882bigWig
  • 5733bed narrowPeak
  • 5391bigBed narrowPeak
  • 2248bed broadPeak
  • 2138tsv
  • 1777bigBed broadPeak
  • 1434tagAlign
  • 331sra
  • 288bed bedRnaElements
  • 288bigBed bedRnaElements
  • 277idat
  • 269gtf
  • 223bed tss_peak
  • 223bigBed tss_peak
  • 223gff gff3
  • 220bed bedMethyl
  • 220bigBed bedMethyl
  • 122bed idr_peak
  • 122bigBed idr_peak
  • 115bed bed6+
  • 115bigBed bed6+
  • 115rcc
  • 110tar
  • 64bed bedLogR
  • 63bigBed bedLogR
  • 59sam
  • 59wig
  • 43bed bed12
  • 43bigBed bed12
  • 30bed bedGraph
  • 27bed bedExonScore
  • 27bigBed bedExonScore
  • 25csfasta
  • 18bed bed9
  • 18bigBed bed9
  • 13csqual
  • 12bed bed3+
  • 12hdf5
  • 10bigBed bed3+
  • 9vcf
  • 8bed peptideMapping
  • 8bigBed peptideMapping
  • 7bed bed3
  • 7bigBed bed3
  • 6bed modPepMap
  • 6bed pepMap
  • 6bigBed modPepMap
  • 6bigBed pepMap
  • 5bedpe
  • 5hic
  • 4CEL
  • 3fasta
Organism
  • 223Homo sapiens
Biosample type
  • 104tissue
  • 57immortalized cell line
  • 47primary cell
  • 7in vitro differentiated cells
  • 7stem cell
  • 1induced pluripotent stem cell line
Organ
  • 25connective tissue
  • 19skin of body
  • 14muscle organ
  • 12intestine
  • 11blood vessel
  • 9stomach
  • 8adipose tissue
  • 8esophagus
  • 8heart
  • 8large intestine
  • 8lung
  • 6vein
  • 5liver
  • 5thyroid gland
  • 4adrenal gland
  • 4extraembryonic component
  • 4gonad
  • 4kidney
  • 4spleen
  • 4uterus
  • 3brain
  • 3breast
  • 2ovary
  • 2pancreas
  • 2placenta
  • 2prostate gland
  • 2testis
  • 1artery
  • 1bone element
  • 1bronchus
  • 1eye
  • 1mammary gland
  • 1mouth
  • 1penis
  • 1spinal cord
  • 1tongue
  • 1urinary bladder
  • 1vagina
Project
  • 223ENCODE
Genome assembly (visualization)
  • 223GRCh38
  • 223hg19
Audit category:
  • 9unreplicated experiment
  • 1missing controlled_by
Audit category:
  • 68inconsistent control read length
  • 3inconsistent platforms
BIOSAMPLE
ASSAY

223 results

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Clear Filters
RAMPAGE
CAGE
tissue
stomach5
thyroid gland5
Peyer's patch4
adrenal gland4
esophagus muscularis mucosa4
immortalized cell line
GM1287816
HeLa-S35
HepG25
K56214
SK-N-SH4
primary cell
endothelial cell of umbilical vein5
keratinocyte5
IMR-903
melanocyte of skin2
B cell1
in vitro differentiated cells
cardiac muscle cell1
hematopoietic multipotent progenitor cell1
hepatocyte1
myotube1
neural cell1
stem cell
H1-hESC3
H7-hESC1
mesenchymal stem cell of Wharton's jelly1
mesenchymal stem cell of adipose1
mesenchymal stem cell of the bone marrow1
induced pluripotent stem cell line
induced pluripotent stem cell1
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