ENCODE
    • Matrix
    • Search
    • Search by region
    • Reference epigenomes
    • Publications
    • About
    • Matrix
    • Search
    • Antibodies
    • Biosamples
    • Genome references
    • Standards and guidelines
    • Ontologies
    • File formats
    • Software tools
    • Pipelines
    • Release policy
    • Data access
    • Getting started
    • REST API
    • Project overview
    • Tutorials
    • News
    • Acknowledgements
    • Contact

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 70RAMPAGE
  • 52CAGE
Assay category
  • 122Transcription
Date released
  • 28May, 2012
  • 22June, 2014
  • 18August, 2015
  • 14December, 2011
  • 12April, 2015
  • 11November, 2014
  • 10March, 2011
  • 4May, 2016
  • 3March, 2016
Available data
  • 11322fastq
  • 10052bam
  • 8882bigWig
  • 5733bed narrowPeak
  • 5391bigBed narrowPeak
  • 2248bed broadPeak
  • 2138tsv
  • 1777bigBed broadPeak
  • 1434tagAlign
  • 331sra
  • 288bed bedRnaElements
  • 288bigBed bedRnaElements
  • 277idat
  • 269gtf
  • 223bed tss_peak
  • 223bigBed tss_peak
  • 223gff gff3
  • 220bed bedMethyl
  • 220bigBed bedMethyl
  • 122bed idr_peak
  • 122bigBed idr_peak
  • 115bed bed6+
  • 115bigBed bed6+
  • 115rcc
  • 110tar
  • 64bed bedLogR
  • 63bigBed bedLogR
  • 59sam
  • 59wig
  • 43bed bed12
  • 43bigBed bed12
  • 30bed bedGraph
  • 27bed bedExonScore
  • 27bigBed bedExonScore
  • 25csfasta
  • 18bed bed9
  • 18bigBed bed9
  • 13csqual
  • 12bed bed3+
  • 12hdf5
  • 10bigBed bed3+
  • 9vcf
  • 8bed peptideMapping
  • 8bigBed peptideMapping
  • 7bed bed3
  • 7bigBed bed3
  • 6bed modPepMap
  • 6bed pepMap
  • 6bigBed modPepMap
  • 6bigBed pepMap
  • 5bedpe
  • 5hic
  • 4CEL
  • 3fasta
Organism
  • 122Homo sapiens
Biosample type
  • 46immortalized cell line
  • 41primary cell
  • 25tissue
  • 5in vitro differentiated cells
  • 4stem cell
  • 1induced pluripotent stem cell line
Organ
  • 17connective tissue
  • 11skin of body
  • 9blood vessel
  • 4extraembryonic component
  • 4kidney
  • 4lung
  • 4vein
  • 3brain
  • 3heart
  • 3muscle organ
  • 3thyroid gland
  • 3uterus
  • 2adrenal gland
  • 2liver
  • 2placenta
  • 1adipose tissue
  • 1artery
  • 1bone element
  • 1breast
  • 1bronchus
  • 1mouth
  • 1penis
  • 1spinal cord
  • 1stomach
  • 1tongue
  • 1urinary bladder
Project
  • 122ENCODE
Genome assembly (visualization)
  • 122GRCh38
  • 122hg19
Audit category:
  • 1missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 2inconsistent platforms
BIOSAMPLE
ASSAY

122 results

search-icontable-tab-icon
Clear Filters
RAMPAGE
CAGE
immortalized cell line
GM1287813
K56213
SK-N-SH4
A5493
HeLa-S33
primary cell
IMR-903
endothelial cell of umbilical vein3
keratinocyte3
melanocyte of skin2
B cell1
tissue
thyroid gland3
adrenal gland2
cerebellum1
diencephalon1
frontal cortex1
in vitro differentiated cells
cardiac muscle cell1
hepatocyte1
neural cell1
neural progenitor cell1
smooth muscle cell1
stem cell
H1-hESC1
mesenchymal stem cell of Wharton's jelly1
mesenchymal stem cell of adipose1
mesenchymal stem cell of the bone marrow1
induced pluripotent stem cell line
induced pluripotent stem cell1
  • Contact
  • Terms of Use
  • Submitter sign-in

©2017 Stanford University.

  • ENCODE
  • UC Santa Cruz
  • Stanford University